Caenorhabditis elegans (nematode): CELE_F28C6.3
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Entry
CELE_F28C6.3 CDS
T00019
Symbol
cpf-1
Name
(RefSeq) Cleavage stimulation factor 50 kDa subunit
KO
K14406
cleavage stimulation factor subunit 1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CELE_F28C6.3 (cpf-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F28C6.3 (cpf-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CELE_F28C6.3 (cpf-1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CSTF1_dimer
ANAPC4_WD40
NBCH_WD40
Ge1_WD40
eIF2A
Cytochrom_D1
Frtz
Motif
Other DBs
NCBI-GeneID:
174378
NCBI-ProteinID:
NP_495822
WormBase:
WBGene00000773
Ensembl:
WBGene00000773
UniProt:
Q19864
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All DBs
Position
II:complement(8600449..8602440)
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AA seq
430 aa
AA seq
DB search
MKPDIKDREYMYRLIIGQLFYDGHQQIAVNLANTLGCSAPAPPPSDKLFRLVTIAKQFVE
DPDYKAEEKSSPMQFEPVSSGLDLEYDADVQPVSSEPSEYETIYLTVHKAPCRAAAFNSD
GSLVATGSADCSIKIMDVERILAREKEHREMNENGPDAHHPVIRTLYDHVDDVNTVIFHP
RDSILISGSNDKTVKLFDFSKTAVKKAMKTLSEVYPVRALSCHPGGEFLLVATDHPTVRL
YNIETAQAYASANPDDQHTESVTDVHYSENARLYVTASKDGHVKIWDGVSNRCVETFKRA
HDGSSICSAKFTKNGKYILTSGMDSIVKLWELSTNRCLIVYTGAGATGAQDFATNASFNH
NEDYVLFPDEKSGSMCSWDARNSDRKRLLALGHTSACRTFVHSPSMPAFMTGSDDHRARF
WYRKPATNEH
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagatatcaaagatcgtgaatacatgtatcggctgattattgggcagcttttc
tacgatggtcatcaacaaattgccgtcaacctcgcaaatactttgggatgttctgctcca
gctccgccgccttcagataaattgttcagactggtcacaattgcaaagcaatttgtagag
gatccagattacaaagccgaagaaaaatcctcgccgatgcaattcgaacccgtctcttcg
ggcttggatctcgaatacgacgctgatgtgcagccagtttcttccgagccatcggagtat
gagaccatctacttgacggttcacaaagctccttgtagagcagcagcgttcaattcggat
ggttccttagtggcaacaggttcagcagattgctcgatcaaaattatggatgttgagaga
attcttgcccgcgagaaagagcacagagaaatgaacgaaaatggtccagatgcgcaccat
ccggtgataagaactctgtatgatcatgttgatgacgttaatactgtgatcttccatcca
agagactcaattcttatctccggatcgaatgataagactgtgaagttatttgatttctca
aaaactgctgttaaaaaggcgatgaaaacgttgtcggaagtatacccagtgcgtgcactc
tcgtgtcacccaggtggtgaatttcttcttgttgcaacggatcatcctactgttcgtctc
tacaacattgaaacagctcaggcatatgcttcagcgaatccagatgatcaacatactgaa
tctgtaacagatgttcattattctgaaaatgcacggctctatgtaacggcttcaaaggat
gggcacgtaaagatatgggatggtgtgtcaaacagatgtgtagagacattcaaaagagct
cacgatggttcatcaatctgctcagccaaatttacaaagaatggaaaatacatattaaca
agtggaatggatagtattgtgaaactatgggaactgagtactaatcggtgtttgattgtc
tatacgggagcaggagctactggagcacaggattttgccacaaacgcttcatttaaccac
aatgaagattacgtgttattcccagacgagaagagtggaagcatgtgctcgtgggatgct
cgcaattccgacagaaagcgacttcttgctctaggacacacatcagcgtgccgaactttc
gttcattccccatccatgccagcattcatgacaggaagtgacgatcatcgtgctcgattc
tggtatagaaaaccggcaacaaatgaacattga
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