Caenorhabditis elegans (nematode): CELE_Y54E10A.9
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Entry
CELE_Y54E10A.9 CDS
T00019
Symbol
vbh-1
Name
(RefSeq) RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
cel
Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y54E10A.9 (vbh-1)
03041 Spliceosome [BR:
cel03041
]
CELE_Y54E10A.9 (vbh-1)
03036 Chromosome and associated proteins [BR:
cel03036
]
CELE_Y54E10A.9 (vbh-1)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_Y54E10A.9 (vbh-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CELE_Y54E10A.9 (vbh-1)
mRNA cycle factors
Common to processing body (P body) and stress granule
CELE_Y54E10A.9 (vbh-1)
Spliceosome [BR:
cel03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CELE_Y54E10A.9 (vbh-1)
Chromosome and associated proteins [BR:
cel03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CELE_Y54E10A.9 (vbh-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
171888
NCBI-ProteinID:
NP_491113
WormBase:
WBGene00006888
Ensembl:
WBGene00006888
UniProt:
Q9N3F4
LinkDB
All DBs
Position
I:complement(3158492..3162391)
Genome browser
AA seq
641 aa
AA seq
DB search
MNTQYYANHNGQQQPPQQQQGQGWSSSYSQQSNNMPAGGVFYNGFANGTPSNNGSSGYNN
FADSGNGFNNNGAESNQWGGAPAEYSESNLFHRTDSGINFDKYENIPVEVSGDSVPAAIE
HFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ
HILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGG
RENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIR
KIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWV
NEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER
NLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT
SFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVAAEGRIGGGQRGGNRRFGATDYRVGRGG
GGSFGGNFSNYNSGGATGGFGSGPAYGGSFGGGAPRRPFTNGGFGAHSSLSSTSNSGGGG
GFSGPRRGGFNSGMNRQGGGGGGFYSNPGQAPIDHWQAPQA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacaatattatgcgaatcacaacggtcaacaacagccgccacaacaacaacag
ggacaaggctggtcatcctcgtattctcaacagagcaataatatgcctgcaggaggcgta
ttttacaacggattcgccaacggaactccgtcaaacaacggatcgtctgggtacaacaac
ttcgccgacagcggaaacggtttcaacaacaatggagccgagagtaatcaatggggagga
gcacctgccgaatattccgaaagcaatttgttccaccgtaccgacagtggcatcaacttt
gacaagtacgaaaatattcccgtagaagtcagcggagactccgttccagcagccatcgag
catttcaatgaagctggttttgggccggctgtgatggagaacgtgaatcgcagcggatac
tccaagccgactcctgtccagaaacactcgatcccaactcttttggctaaccgcgatctg
atgtcttgcgctcaaaccggatctggaaaaactgccgctttcctgctcccaattattcag
catattttggctggtggtccagatatggtcaagccgccagcgttcacaaacggtcgtcgc
acttactatccatgtgctctggttctctcgccgactcgtgaacttgccattcaaatccac
aaggaagctacaaagttcagctacaaaagcaacatccagacggctattctttacggagga
cgtgaaaactatcgtgatcaagtgaatcgtcttcgcgctggaacgcatatcctcattgct
accccaggtcgtttgattgacattattgagcaaggattcattggactcgccggatgtcgt
tacctggttctcgacgaagctgatcgtatgcttgacatgggatttgagccgcaaatcaga
aagatcgttggccaaggaatgccaccaaagactgctcgtaccacagctatgttcagtgca
accttcccgaaggagattcaagttctcgctaaggacttcctcaaggataactatatcttt
ttggcagttggtcgtgttggatcaacgtctgaaaatattgaacaacgtctgctttgggtc
aacgagatggaaaagagaagcaatctgatggaaattctgatgaacgagcattctgaaaat
ctggttctcgtattcgttgagacaaagagaggagccaacgagttggcgtatttcctcaat
cgtcagcagatccgctctgtttcaattcacggagatctcaaacaaattgaacgtgagaga
aatctcgagttgttccgctctggacagtgcccaattcttgtcgcaactgctgttgccgct
cgtggattggatattccaaatgtgcgccacgtcatcaattatgatcttcctggagattct
gacgaatatgttcaccgtatcggtagaaccggaagatgcggaaaccttggaattgccacc
agtttcttcaatgacaagaatcgaggaatcggtcgtgatttgaagaatctgattgtcgaa
tccaaccaagaagtcccagaatggcttcatcaagttgctgcagaaggacgcattggaggt
ggacaacgtggtggaaaccgtcgcttcggagcaaccgactatcgtgttggtcgtggtggt
ggtggatcgttcggaggaaacttctcaaattacaattccggtggagccactggtggtttc
ggaagtggacccgcctacggtggttcgttcggaggaggagcaccacgtcgcccgttcacg
aatggaggattcggagctcatagctctctgtcgtctacctctaatagtggtggcggtggc
ggcttcagtggcccaagaagaggtggcttcaacagtggaatgaaccgtcagggtggtggc
ggtggaggtttttactcaaacccaggccaggctccaattgatcattggcaagctccacaa
gcttaa
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integrated database retrieval system
