Caenorhabditis elegans (nematode): CELE_Y39A1A.14
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Entry
CELE_Y39A1A.14 CDS
T00019
Symbol
emg-1
Name
(RefSeq) Ribosomal RNA small subunit methyltransferase nep-1
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CELE_Y39A1A.14 (emg-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_Y39A1A.14 (emg-1)
Enzymes [BR:
cel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
CELE_Y39A1A.14 (emg-1)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
90S particles
Other 90S particles
CELE_Y39A1A.14 (emg-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
HepT-like_2
Motif
Other DBs
NCBI-GeneID:
176488
NCBI-ProteinID:
NP_001379033
WormBase:
WBGene00012652
Ensembl:
WBGene00012652
LinkDB
All DBs
Position
III:<10649519..10650908
Genome browser
AA seq
231 aa
AA seq
DB search
MSHEYDTVAPPNAKRMKTDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRK
QKKDPADYRPDILHQCLLNLLDSPLNRAGKLRVFFRTSKNVLVDVSPQCRIPRTFDRFCG
LMVQLLHKLSIRAAETTQKLMSVVKNPVSNHLPVGSRKMLMSFNVPELTMANKLVAPETD
EPLVLIIGGIARGKIVVDYNDSETKISNYPLSAALTCAKVTSGLEEIWGII
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgagtacgatacagttgcaccgccaaatgcgaagcgcatgaagacggataat
caattggaggacaagaagattttgtacgttgtactggaaggatgtagtcttgaaactgca
aaagtcggtggagaatacgcaattttgagcagtgataaacacgcgaattttctgagaaaa
cagaaaaaagatccggctgattatcggccagatatcctacatcaatgcttgttgaatcta
cttgatagtccgcttaacagagccggaaagcttcgtgtcttctttagaacgagcaagaat
gtgctcgttgatgtctcaccacagtgcagaattccaagaacttttgatcgattctgtgga
cttatggtccaactcctgcacaaactctccattcgagccgccgaaaccactcaaaagctg
atgtcagtagtgaagaatccagtgtcgaaccatcttccagtgggatcccgtaagatgctc
atgtcgttcaatgtacctgagctaacaatggctaataagcttgttgcaccggaaaccgac
gagcctctggtccttattatcggtggaattgctcgtggaaagatcgtcgtcgattacaac
gattctgagaccaagatcagcaattatccattgagtgcagcgttgacttgtgccaaagtg
accagtggacttgaggagatttggggaattatttaa
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