Caenorhabditis elegans (nematode): CELE_Y39G8C.1
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Entry
CELE_Y39G8C.1 CDS
T00019
Symbol
xrn-1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03008
Ribosome biogenesis in eukaryotes
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CELE_Y39G8C.1 (xrn-1)
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_Y39G8C.1 (xrn-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y39G8C.1 (xrn-1)
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_Y39G8C.1 (xrn-1)
03016 Transfer RNA biogenesis [BR:
cel03016
]
CELE_Y39G8C.1 (xrn-1)
03036 Chromosome and associated proteins [BR:
cel03036
]
CELE_Y39G8C.1 (xrn-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CELE_Y39G8C.1 (xrn-1)
mRNA degradation factors
5'-3' decay
5' exonucleases
CELE_Y39G8C.1 (xrn-1)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
Pre-60S particles
RNases
CELE_Y39G8C.1 (xrn-1)
Transfer RNA biogenesis [BR:
cel03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CELE_Y39G8C.1 (xrn-1)
Chromosome and associated proteins [BR:
cel03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CELE_Y39G8C.1 (xrn-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Meiosis_expr
Motif
Other DBs
NCBI-GeneID:
175059
NCBI-ProteinID:
NP_496945
WormBase:
WBGene00012730
Ensembl:
WBGene00012730
UniProt:
Q9BHK7
LinkDB
All DBs
Position
II:14068907..14089877
Genome browser
AA seq
1591 aa
AA seq
DB search
MGVPKFYRWTSERYPCLSEVINESQIPEFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEI
FVNIFAYIENLYNLIRPQKVFFMAVDGVAPRAKMNQQRARRFMSARTAHTQLAKALENGE
IMPSEARFDSNCITPGTYFMTRLHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHK
IMDFIRTERAGSSYDPNTRHCMYGLDADLIMLGIVSHEPHFSLLREEVTFNTRPRKNDNK
ATKKPKRTDSDVKKFHLLHLSLLREYLAWEFADVKDSLPFEYEMERIVDDWILLGLLVGN
DFLPHLPNIHIHDDALPLLYSTYKKVLPTLDGYINEAGYLNLSRFEAFLAELALNDKTSF
MERLEDEQFMESKRIRVVDPEQQELAEPELVAFESSDVEDEAGAEESKDEAGGAGAEDDE
DDAAFVSDHEEDGDDLEPGSGSDELLLSNLDAQLLEDEFNDELATLALSGMNDADFANDV
EACWTKTINNQFKRHKKTYYSDKLRYKNISKQQLREQAEGYVRAIQWNLHYYYHGCVSWS
WFYPHHYAPFISDVRGFVGMRMEFELSEPFHPFEQLLAVLPEASADCLPRPLRELMSSDP
AKSPICDFYPANFETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNSHG
SHIQCISSPEPPNSQGQWRTVRSEIPQDSFRIPRSQVKWGLLPNVKMDVYFPGFPTMKHL
SHLGELRFANCNIFGMASRKESMVLKVENERAHTDIIELGSELCDEEVCIDWPILKVAKI
DSIWGGDDKIVRKCDDEIIVKDMSEEEKRQWQAHANQLTEHLMTRFAIEIAAQKDSKGKH
IRPAVAWVRKFTGLVYEAQGGGKEPSVLKACKQWSSPQQLMPVLLPLVVKDVLLENSRVL
ADLPMKQAYPKQSIVWITDPKFALFGMPGMVNGFSNEKSADCRIEVIGMSTQNKVDKMEA
LRKKMEQKSLRWMGGYDCARQCQVDTRLFARITGTMFLWNEPRERVEKGQQISSSDSKIN
CGLALKYSRRDLCVADYTDRTEHTNQRGVTNKVWFYTNLATRLVSEYRRKFPDVWKYLET
IGLTQQDDVYYTEDIWSNEKTREKRFGELSEFLGGLPSLEAEQLKCGTVYADRQLITEIE
MILAEPDEKKPVMNKYMMAPGALFRYELYNGKVHADPAADFQILDRVALMSSDTKVPKTT
QGTVVGIHDDKIDVFFDKPFDGGQKVRGSNEAAAIRVPQSALLNVTFGIVRKNVQHKKQV
EKALTGAYVPMPAQKNSAKNEPAPSTSSSNSNSTNNKKNSSKKEKNKQKPTKTDEESPEA
LTDSLNKLLKIKPPSAEATSGKQVSLMELLGGGGAAGAKKPAQNAKTLAEIESDSSQSAS
KSSILQQLSAAQKAAAPKPKKEASQKKQKPQAAPPQKVEILRKPTPPPPPPAEEQKPAPA
PFGAPTPPPQFPFGPQPLQFAPHPMMMMGYPMGMPMGMPIGGPHHYQQQQNQQEKRANHP
TLTDFKPSAVHRRQNCHQRPSNQPPKVTMITKRTSSPTPPEKEEDAAPRALPSSPPPPSK
SAAEEKTTTKKPRKKKQSRLGSNFSNPTASS
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccccaagttctaccgatggacatcggagcgatatccgtgtctgagtgaagtg
atcaacgaatcgcaaattccggaattcgacaatttgtatttggatatgaatggaattatt
cataattgctcgcatccgaatgacgatgacgtcacgtttcgaattacggaagacgagatt
ttcgtgaatattttcgcgtatattgagaatctctacaatctaattcgcccgcaaaaggtg
ttcttcatggccgtcgacggtgtggctccgcgagcaaaaatgaatcagcaacgggcgaga
cgattcatgtcagcccgaacagcccatactcaactcgcaaaagcgctggaaaatggcgaa
attatgccatctgaagctcgattcgactcgaattgtatcaccccgggcacatatttcatg
acacggcttcatcagaagcttgacgattggattaaaacgaaatcggcgaccgattcgcgt
tggcaaggccgaaaaattattctcagcggtcacaatgtgcccggtgaaggagagcacaaa
ataatggattttatccgtacggaacgggccggctcgagctacgatccaaatacacgtcac
tgtatgtacggcctggacgccgatctgataatgctcggaatagtctcccatgagccacat
ttctcgttgctccgagaggaagtgacgtttaatacgagaccacgcaagaatgataataag
gcgacgaaaaagccgaagcgaacggattccgacgtgaagaaattccatttgcttcatcta
tcactgctccgagagtatttggcgtgggaatttgctgatgttaaggactcgctaccattc
gagtacgaaatggagcgaatcgtcgacgattggatccttctgggccttctagtaggaaac
gattttcttccacacttgcccaatattcatattcacgacgacgcccttccgctgctctac
tcgacgtataaaaaagtgctgccgacacttgacgggtacattaacgaggccggctacctc
aatttgtcgcgtttcgaagcttttctggcggagctggcgctgaacgacaagacatcgttt
atggagcgactcgaggatgaacagtttatggagtcgaagaggatccgagttgtggatcca
gagcagcaggagctcgcggagcccgaactggtggcttttgagtcgtcggatgttgaggat
gaagctggagcagaggagagcaaggatgaagctggtggagctggagcagaggatgatgaa
gacgacgctgcatttgtcagtgatcatgaggaggatggagatgatctggagccgggttct
gggtctgatgagcttctcctctcaaatctcgacgcccaactgctggaggacgaatttaac
gacgagctcgccacgttggcgctctccggaatgaacgacgcggattttgcgaacgacgtg
gaggcttgctggacgaaaaccatcaataatcagttcaaacggcacaaaaagacgtactac
tcggacaaacttcgctacaaaaacatctcgaagcagcagctccgcgaacaagccgaagga
tacgtgcgggctattcaatggaacctccactactactatcatggatgcgtctcgtggagc
tggttctacccgcatcactatgctccgttcatctccgatgttcgcggattcgtgggcatg
cggatggagttcgagctctccgagccattccacccgtttgagcagttgctcgccgtgctg
ccagaagcgtcggccgactgtctaccacgtccacttcgcgagctgatgtcgtcggatcct
gcgaaatcgccgatttgcgacttttatccggccaactttgagacggacctgaacgggaag
cgcaacgagtgggaagcggtggtgctgatcccgtttatcgaggagaagcggcttctggag
gcgattgaggcgaaacggagccgcttgacgagtgaggaaaatgctcggaattctcatgga
tctcatattcagtgtatatcatcaccagagccgccaaatagccaaggccaatggcgaact
gttcgttctgaaatcccacaagattcgttcaggattccaagatcccaagtcaagtgggga
ctcttacccaatgtgaaaatggatgtgtacttcccgggatttccgacgatgaagcatttg
agccatctcggagagctgcgattcgcgaattgcaatatttttggaatggcgtcgcgaaag
gagtcgatggtgttgaaggtggaaaacgagcgggctcacactgatattatcgagcttgga
tccgagctttgcgacgaggaagtctgtatcgattggcccatcctgaaagtggcaaaaatc
gattcaatatggggaggagacgataaaatagtccgaaaatgcgacgatgagattattgtg
aaggatatgagcgaagaggagaagcggcagtggcaagctcacgcgaatcagctcaccgag
catctaatgacacgtttcgctatagaaattgccgcacaaaaggactcgaagggcaagcac
atccggcctgctgtggcctgggttcggaagtttactggcttggtgtatgaagcccaggga
ggaggcaaggagccttctgttctgaaggcctgtaagcaatggtcgagcccacagcagttg
atgccggtgctcttgccgctggttgttaaggatgtcctcctcgaaaattcccgtgttctg
gctgaccttccgatgaaacaagcctatccaaaacagtctatcgtttggattacagacccg
aaatttgcacttttcggaatgcccggaatggttaatgggttcagcaatgaaaagtcggcg
gattgccgaatcgaggtgatcggaatgtccacccagaacaaggttgacaaaatggaggct
ctccgcaagaaaatggagcaaaaatcgctccgatggatgggcggctacgattgtgctcgg
cagtgtcaagtggacaccaggcttttcgcaagaatcaccggaacaatgttcctatggaat
gagccgagggaacgtgtcgaaaagggtcagcagatatcgtcgtcagactcgaaaatcaac
tgtggcctggcgttgaaatattctcggagggatctatgtgtggcggattatacggatcga
acggagcacacgaatcagcgaggcgtcacgaataaagtgtggttttacacgaatttggcg
acccgtctagtgtcggaatataggcgaaagttcccggatgtctggaaatatttggaaaca
atcgggcttacgcagcaagacgatgtctactatacagaggacatttggagcaatgaaaag
acgcgggagaagcgattcggcgagctcagcgagtttctaggcggcctaccgagcctggag
gccgagcagctcaagtgtggaacagtttacgcggatcgccagctgattacggagattgag
atgattctcgcggagcctgatgagaagaagccggtgatgaataagtatatgatggcgcct
ggtgcacttttccgttatgagctttacaatgggaaggttcatgcggatccggcggcggat
tttcagattttggatcgggttgcgttgatgtcgtcggatacgaaagttccaaaaacgacg
caaggaacagttgtcggcattcacgatgacaaaatcgacgtctttttcgataaaccgttt
gacggtggacaaaaagttcgaggatcgaatgaagcggccgcaattcgagtacctcaaagt
gcactgcttaatgtcactttcggaattgtccggaaaaatgttcagcacaagaaacaagtg
gaaaaagctctgactggtgcctacgttccgatgccggcgcagaaaaattcggcgaaaaat
gagccagctccgtcgacctcgagctccaactccaacagcaccaacaacaagaaaaattcg
tcgaaaaaggagaagaataagcaaaagccgacaaaaaccgacgaagaatcaccagaagct
ctgacagattcgttgaataagctgctgaagatcaagccgccgtcagcagaagctacgtct
ggaaagcaagtatcactgatggagctgctcggcggaggaggagccgctggagccaaaaaa
cctgctcaaaacgccaaaactctggcggaaattgagtcggattcgtctcaatccgcgtca
aaatcctcgattctccagcagctctcggcggctcagaaggctgctgctccgaagccgaaa
aaagaggcttcacagaagaagcagaagccccaggcggctcctccacagaaagtggagatt
ctgcggaaaccaactccaccgccgccgccgccggcggaggagcagaagccagctccagct
ccattcggagctccaacaccaccgccacaattcccgttcggaccccagccgctacagttt
gctccgcacccgatgatgatgatggggtacccgatgggaatgcctatggggatgcctatc
ggggggcctcaccactaccaacagcagcagaaccagcaggaaaaacgagccaaccaccca
acgctaaccgacttcaagccgtcggcagttcaccgccgtcaaaattgtcatcaacgtccg
tcgaatcagccgccaaaagtgacaatgatcacaaaacgaacatcatcaccgactcctcca
gaaaaagaagaagatgctgctccgagagccctccctagctcaccgccaccaccatcaaaa
tccgccgccgaggaaaagacgacgacgaaaaaaccgcgtaaaaagaagcaatcgcggctc
ggaagcaatttcagcaatccgacggcttcatcttaa
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integrated database retrieval system
