Caenorhabditis elegans (nematode): CELE_C06A1.1
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Entry
CELE_C06A1.1 CDS
T00019
Symbol
cdc-48.1
Name
(RefSeq) Transitional endoplasmic reticulum ATPase homolog 1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04137
Mitophagy - animal
cel04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
CELE_C06A1.1 (cdc-48.1)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
CELE_C06A1.1 (cdc-48.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_C06A1.1 (cdc-48.1)
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_C06A1.1 (cdc-48.1)
04131 Membrane trafficking [BR:
cel04131
]
CELE_C06A1.1 (cdc-48.1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cel04147
]
CELE_C06A1.1 (cdc-48.1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
CELE_C06A1.1 (cdc-48.1)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
CELE_C06A1.1 (cdc-48.1)
Membrane trafficking [BR:
cel04131
]
SNARE
SNARE associated proteins
Others
CELE_C06A1.1 (cdc-48.1)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
CELE_C06A1.1 (cdc-48.1)
Exosome [BR:
cel04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
CELE_C06A1.1 (cdc-48.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_22
AAA_2
TIP49
AAA_14
AAA_33
RNA_helicase
AAA_28
AAA_18
nSTAND3
Parvo_NS1
Mg_chelatase
IstB_IS21
AAA_17
AAA_7
ABC_tran
AAA_25
Vps4_C
Bac_DnaA
ATPase_2
ResIII
Sigma54_activ_2
Zeta_toxin
Viral_helicase1
DUF815
NACHT
UFD1
AAA_24
TsaE
NB-ARC
Rad17
bpMoxR
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
174624
NCBI-ProteinID:
NP_496273
WormBase:
WBGene00007352
Ensembl:
WBGene00007352
UniProt:
P54811
LinkDB
All DBs
Position
II:complement(10560036..10563407)
Genome browser
AA seq
809 aa
AA seq
DB search
MASVPTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRG
DAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRI
HVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPAC
IVSPDTMIHYEGDPIKREEEEESMNDIGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIG
IKPPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECE
KNQPAILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSID
GALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASL
CSEAALQQIREKMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKSSPSALREAVVETPNT
TWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE
CQANFISIKGPELLTMWFGESEANVRDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDG
GGASDRVINQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASR
HQILKASLRKTPLSKDLDLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKER
QDRQARGEELMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFG
NNFKFPGEQRGSDAPSAPVPAQDDDDLYN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggttccaacgcatcaaagcgaaaaagagaagaaaaatgatgagctgtcgaca
gctattctcaaggacaaggtaaagccgaatcgcttgatcgtcgatcagtccgagcaggat
gataattccgtcatcgcagtttcccaagctaaaatggacgaactgggacttttccgtgga
gatgctgtcatcctgaagggaaagaagcgaaaggaatctgtcgccatcattgtctctgat
gagtcctgtccaaacgagaaagttcgcatgaaccgtgttgtccgcaacaatcttcgtatt
cgcctcggagacgtcgtgagcattacgccagctccaaatctcagttacggaacccgcatt
cacgtgctccctattgatgacactatcgaaggactcactggaaacttgttcgatgttttc
ctcaagccatacttcctggaggcttaccgcccacttcacaagggagatatattcactgtt
caagctgccatgagaactgtggaattcaaagttgtcgaaactgagccagctccagcctgc
attgtgtcacctgataccatgattcactacgaaggagatccgatcaagagagaagaagaa
gaagagagcatgaatgatattggttatgatgacttgggaggagttcggaagcaattggct
cagatcaaggaaatggttgaactgccacttcgacatccccaacttttcaaggctattggt
atcaagccaccacgtggaattcttctcttcggtccacctggcacaggaaagactcttatt
gcacgtgctgttgctaatgaaaccggatctttcttcttccttatcaacggacctgaagta
atgtcaaagatgtctggagaatccgagtcaaatcttcgtaaggctttcgaagaatgcgag
aagaatcaaccagctattctgtttattgacgaaattgacgccattgcaccaaaacgcgag
aagaccaatggagaagttgagcgcagaattgtttctcaattgcttacacttatggatgga
gtcaagggtcgttctaaccttgtggtcattgctgcaacaaatcgtccaaactcgattgac
ggtgctcttcgtcgcttcggaagattcgatcgtgaaatcgatatcggaattccagatgca
gtcggccggcttgagattctgcgcattcacacgaaaaacatgaagctcgcggatgatgtt
gatcttgaacaaattgcaaatgaatgtcacggattcgttggtgccgatttggcatcgttg
tgctcggaagccgctcttcaacagattcgtgaaaagatggagctcattgatctcgaagat
gaccaaattgatgcagaggttcttaattcactcgctgtcacaatggaaaacttccgtttt
gctcaaggaaagtcttccccatccgctctccgcgaggctgttgtcgaaactccgaataca
acttggtccgacattggaggtcttcaaaacgtcaagcgcgaacttcaagaattggttcag
tatccagtggaacacccagaaaaatatctcaagtttggaatgcagccatcaagaggagtt
ttgttctatgggccaccaggatgtggtaagacacttcttgccaaggcaattgccaacgag
tgtcaagccaatttcatctccatcaagggtccagaattgctcacaatgtggttcggagaa
tcggaagctaacgtccgtgatgtcttcgacaaggctcgtgcagctgctccttgcgtgttg
ttcttcgatgagttggattcgattgccaaggcaagaggtggaggcgccggcggtgatgga
ggaggtgcatcggatcgtgtaatcaatcaagtgctcaccgaaatggatggaatgaacgcg
aagaaaaatgtgttcatcatcggagctacaaacagacctgatatcattgatccagctgtt
cttcgtccaggtcgccttgatcagcttatctacatcccactcccagacgaagcttctcgg
caccaaattttgaaagcttctcttcgtaaaaccccactctccaaggatcttgacttgacc
ttcttggccaaaaacactgttggattctctggagccgatttgaccgaaatttgtcagaga
gcgtgtaagctggctattcgcgaatcgatcgaaaaggaaattcggattgagaaggaacgt
caagatcgccaagctcgcggtgaggagctcatggaagacgatgcagttgatccagtacca
gaaattactcgtgctcacttcgaggaagccatgaagtttgccagacgctctgttacagac
aatgacatcagaaagtacgaaatgtttgcacaaacattgcaacaatctcgtggctttgga
aacaacttcaaattcccaggagaacaacgcggaagcgatgccccatctgcccctgtacct
gctcaggatgatgacgacctttataactaa
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integrated database retrieval system
