Caenorhabditis elegans (nematode): CELE_Y59A8B.6
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Entry
CELE_Y59A8B.6 CDS
T00019
Symbol
prp-6
Name
(RefSeq) Pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_Y59A8B.6 (prp-6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_Y59A8B.6 (prp-6)
Spliceosome [BR:
cel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CELE_Y59A8B.6 (prp-6)
Complex C
U5 SnRNP specific factors
CELE_Y59A8B.6 (prp-6)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
TPR_2
TPR_8
Suf
TPR_12
TPR_11
Motif
Other DBs
NCBI-GeneID:
180180
NCBI-ProteinID:
NP_507525
WormBase:
WBGene00013343
Ensembl:
WBGene00013343
UniProt:
Q9GRZ2
LinkDB
All DBs
Position
V:18022479..18042353
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AA seq
968 aa
AA seq
DB search
MATTIPGSLVNKTKKFFMGMPAPTGYVPGVGRGATGFTTRSDIGPARDPTELPEAGPVGP
SPQGASSSSAPPAKRARDDDGDGEDLNEANYDEFSGYSGSLFSKDPYDQEDEDADRIYNE
VDDRLDERHKERREKKYKELVELFHKDRPKIQQGFQDLKRQLAEVTEDEWQAIPEVGDMR
NKAKRNARAEKFTPVPDSIIAMNMNYGQMSHSIDSGNGLTTPFASGFMSTLGGGGGAAAA
GAKSGIMTPGWKSDIPSSGTSTDLDLVKIGQARNKIMDMQLTQVSDSVTGQTVVDPKGYL
TDMQSIIPQMGGDLQDIKKARMLLKSVRETNPRHPPAWVASAVLEEQAGKLQTARNFIME
GCEKIKNSEELWLHAIRLHPPELGRSIVANAVRSCPHSVRLWCKASDLEQDLKDKKKVLR
KALEQIPSSVKLWKAAVELEDPEDARILLTRAVECCSSSTEMWLALARLETYENARKVLN
KAREHIPTDRHIWLSAARLEETRGQKDMVDKIVAKAMSSLKVNQVEINRDQWLKDAVDAE
MAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFTCVRTVYAIALKEFSRKR
SIWDAAIHFEREHGSLDEHEAILLKACETVPEVEDYWLMLAKLRFVNKRVGEARDTLMSA
FEKHGHQSEKIWLAATKIEIETDQFDTARGLFGKARAKAPSARVWMKNAHFEWCLGNVEE
AKRLCEECIQKYDDFHKIYLVLGQVLEQMNDVHGARLAYTQGIRKCPGVIPLWILLVRLE
EKAGQIVKARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEMAKERMSRALQECEGSGKL
WAEAIWMEGPHGRRAKSIDALKKCEHNPHVLIAAARLFWSERKIKKAREWFVRAVNLDPD
NGDAFANFLAFEQIHGKEEDRKSVFKKCVTSEPRYGDLWQSVSKDPINWRRTTEEILQLA
TQKIKVPT
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacaattccaggatcactggtcaataagaccaaaaaattctttatgggaatg
ccagcaccaacaggatatgttcctggagttggtagaggtgccactggcttcacaactcgt
tctgacattggtccagcacgtgatcccactgaactaccagaagccggaccagtcggacca
tcaccacaaggagcttcatcgtcatcagctccaccagcaaagcgagcccgggatgatgat
ggagatggagaagatctgaacgaggcgaattatgatgaattttcgggttatagtggaagt
ttgttctcgaaagatccgtatgatcaggaggatgaggatgctgatcgtatttataatgag
gttgatgatcgattggatgaacggcataaggaacggagagagaaaaagtacaaggagctc
gtcgaactcttccataaagaccgcccgaaaattcaacaaggatttcaggatttgaagaga
caattggctgaggtaaccgaagatgaatggcaagcgattccagaagtcggtgatatgcgt
aacaaggcaaaacgtaacgcccgtgccgagaaattcactcccgttcctgattcaattatt
gcgatgaacatgaattatggacaaatgagccattcaattgattcgggaaatggtctcaca
acgccttttgccagtggattcatgtctacgttgggtggtggtggtggagcagctgctgct
ggagcaaaaagtggaataatgacaccgggctggaagtcagacattccatcatcaggcacc
tcaaccgacttggatctcgttaaaatcggtcaagcccgtaacaaaattatggatatgcag
ttgacacaggtctccgattcggttacaggacagactgtagttgatccgaaaggttatttg
actgatatgcaaagtattattccacaaatgggtggagatcttcaagatattaagaaagct
cgaatgttgctgaaatctgtgagagaaacgaatccccggcatccaccggcgtgggttgcg
tcggcggttcttgaggaacaagctggaaagcttcagactgcacggaatttcattatggag
ggatgtgagaagattaagaattcggaggagttgtggctccacgcaatccgccttcatcca
ccagagcttggccgttcaatcgtcgcaaacgcagtccgttcgtgtccccacagtgtccgt
ctatggtgtaaggcgtcggatctcgagcaggatctgaaagacaagaaaaaagtgctccga
aaggctctcgaacaaatcccatcgtcagtgaagctttggaaggcggccgtcgagcttgaa
gatccagaagatgctcgaattttgctcacccgggcggtcgaatgttgtagctcgtctacc
gagatgtggttggctctggcacgtctcgagacttatgagaatgctcgaaaagtgcttaat
aaggctcgtgagcacattccgacagaccgtcatatttggctgtcggccgcccgtctcgag
gagacacgtggacaaaaggatatggttgataagattgttgcgaaggcgatgagctcgttg
aaggtcaatcaagtggaaattaatagggatcagtggttgaaggatgccgtcgatgcggaa
atggcaaaatgtcccattacttgtcaggctatcattcgaaacgtgattggattgggtgtc
gaagatgaggataaacgtaccacatggctcgccgacgctgaaaatttcgaaaaagaggag
gcattcacgtgtgtacgtacggtatacgctattgctctcaaggaattttcacgaaaacgt
agtatttgggatgctgctattcattttgaacgggaacacggttcacttgacgaacacgag
gcgatccttctaaaagcgtgtgaaacagttccagaagttgaagattattggcttatgctt
gcaaaacttcgtttcgttaataaacgagtcggcgaagcacgtgatacattaatgagtgca
ttcgaaaaacatggacatcaatcggaaaagatttggcttgccgctacgaagattgaaatt
gaaactgatcaatttgatacggcacgtggattatttggaaaagctagagccaaagcgccg
tcggctagagtttggatgaaaaatgcgcatttcgaatggtgtcttggcaacgttgaagag
gcgaaacgtctttgtgaagagtgtattcagaaatatgatgatttccacaagatttatctc
gttttgggacaagttttggagcaaatgaacgatgttcacggagcccgtcttgcttatact
caaggaattcgtaaatgccctggcgtcattccactttggattctcctcgtacgcctcgaa
gaaaaagccggtcaaattgtaaaagcacgtgttgatttggaaaaagcgaggcttcgtaat
ccgaaaaatgatgatttatggttggaaagtgtccgttttgagcagcgtgtcggatgtcct
gaaatggcaaaagaacgaatgagtcgagcacttcaagagtgtgaaggaagtggaaagcta
tgggctgaagcaatttggatggaaggaccacacggccgacgtgctaaatcgattgatgca
ttgaaaaagtgtgaacacaatccacacgtacttattgcggctgcaaggcttttctggagt
gagagaaagatcaaaaaggcacgtgaatggtttgttagagctgttaatctggatccggat
aatggagacgcattcgccaattttttggctttcgagcagattcacggaaaagaggaggac
cgcaagtcggtattcaaaaaatgtgtgacatcggagcctcgttacggtgatctatggcaa
tctgtatcgaaggatccgattaattggagacgtacaactgaagagatattacagctggca
acgcagaagattaaagttcctacttga
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