Caenorhabditis elegans (nematode): CELE_C47D12.8
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Entry
CELE_C47D12.8 CDS
T00019
Symbol
xpf-1
Name
(RefSeq) ERCC4 domain-containing protein
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03420
Nucleotide excision repair
cel03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CELE_C47D12.8 (xpf-1)
03460 Fanconi anemia pathway
CELE_C47D12.8 (xpf-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cel03032
]
CELE_C47D12.8 (xpf-1)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_C47D12.8 (xpf-1)
DNA replication proteins [BR:
cel03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
CELE_C47D12.8 (xpf-1)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
CELE_C47D12.8 (xpf-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Motif
Other DBs
NCBI-GeneID:
174793
NCBI-ProteinID:
NP_496498
WormBase:
WBGene00008140
Ensembl:
WBGene00008140
UniProt:
G5EBZ1
LinkDB
All DBs
Position
II:<11696171..11705371
Genome browser
AA seq
935 aa
AA seq
DB search
METETDDSETSLNDSFGNKDGLELLEYERATLAKTLPASVLFVVANGLGLERLFLEHLIL
FSDRRLLALVLNTNEHDESYFVSKLKEHNVECDPKVINSEVSIKDRQSIYLEGGVQFCSS
RVLLVDLLQNRIPTDRIAAIFVYRAHQTLNAFQDSFILRLYREKKPDGTVKAFTDFPNSL
SSLGQLQRLVDRLYIRHVELMPRFSSIIESELNRYQLKTAIFSVDVPTPLRRVHRTIIEF
IKVCVRDLRTCSTSGKQTDEQNEEMIHVPWAATRLEKRLHDRRGHISEKQQRLLNDVASL
REILQLSENMDVATVLSRLQVLKNDRTVLEEHSGWLLSPSFNRIMEDLLTIAGVTNGKAD
YKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQVTDVVRYGINK
MKWMTWRQLGYKSTQEMPEDEPLWDPDTISQLMRSSVDGESKSEVIANVQKTQKTTARAA
QKRRKHAEELSGFSSDHRVQTNLIQFGILQYKRRKSGNEASTSQETTEWEVKEEMEEIEE
ITKNIGDLEAELVVSTTRERERYTLLKLLETKKPRAIVLYTMSLQTLRQIEIYRSTNPNR
SLHVYWLQYTESTEESRYLESINRETMSFELLIREQGTLLISREFNVDREDAPRLKISTR
DGGGARRDGAVDPRDQMDPEEELERPKIIVDMREFNSELPTVLYTKGYNVVATTIEIGDY
ILSPNIAIERKALDDLTQSLQSGRVFKQIEQMLEHYDCTVLLIESNRKFETKIVNGGPFQ
GELSRHCREIRSIFCSLIWANPKMRCVWTISPTNSAEFFSELKLSAPEPDVDRAISLKAD
QVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQIFGIKASEAHNLLANSSIKTLA
DLFSLNITASHLSDFIPSTSADFIKDLSTFNFGRK
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagaaaccgacgattcagaaacgtcactgaacgatagttttggcaataaagat
ggtttagagcttttggaatatgaacgagcaactctcgcaaagacacttccagctagtgtg
cttttcgtagtggccaatggcctgggtctcgaacgtctttttctcgaacatcttattctc
ttctccgatcgacgtctcctggccctagttctcaatacaaatgagcatgacgagagctat
tttgtctcaaagctcaaagagcacaatgtggagtgtgatccgaaggttattaactcagaa
gtttcaatcaaagaccgacaatcaatttatctggaaggtggtgtacagttttgttcgagt
cgtgtacttttggtggatctgctgcaaaatcgaattcctactgatcgaatcgcggcgatt
tttgtttatagagcacatcaaaccctcaacgccttccaagactcgttcattttgcgtttg
taccgcgaaaagaagccagatggaacggtgaaagctttcacggattttccaaattccctc
tcttctcttggccagcttcaaaggctcgtcgatcgtctatacattcgccacgtggagctt
atgccacgattctcgagcatcatcgaatcagagcttaatcgatatcaattgaagactgca
attttctcggtagacgtcccaacacctctccgtcgagtccatagaactattatcgagttt
attaaagtttgcgtccgagatttgagaacttgttctacttctggaaaacaaaccgatgaa
cagaatgaagaaatgattcatgttccatgggcagcgactcgactggaaaaacggcttcat
gatcgacgtggtcatatttctgaaaaacagcagcgtcttctcaatgatgtagcgtcactt
cgcgaaattcttcaactttctgaaaatatggacgtagctactgtgctgtcaaggcttcaa
gttttgaaaaatgacagaacagtgctcgaggagcacagcggatggctgctgtcaccgtct
ttcaatcgaattatggaggatttgctaacgattgctggtgtgacaaatggcaaagctgac
tacaagaaattcgcgactcctgcgaaatggacagtactctcggagattcttagagaaatt
aagatgcttccagtggagaaaaaggataggggaaacgattcaccatcggttcttgtcatt
accagctccgaggatctctcccgccaggtcaccgacgtagttcgttatggaatcaataaa
atgaagtggatgacgtggagacaattgggatacaaaagcacacaggaaatgcctgaagat
gagcctttatgggatcctgatacgatttctcaacttatgagaagctcagtagatggcgaa
tcgaaaagtgaagtgattgcaaatgttcaaaaaactcaaaaaactacggctcgagctgct
caaaagcggcgaaaacatgcggaagagctcagcggattctccagtgatcatcgtgttcag
accaatttgatacagttcggaattctacagtataagcgtcgaaaatctggaaatgaggct
tctacatcacaagaaaccacagaatgggaggttaaagaggagatggaagagattgaggaa
atcacgaaaaatattggagatcttgaagccgaactggtggtgagcacgacgagagaacgc
gaacgatatactttgttgaaacttctggaaacgaagaaacctcgcgccattgtgctctac
acaatgtcgctgcaaacgttgaggcagatagagatctaccgttccacaaatcccaacaga
tcccttcatgtatactggcttcaatacaccgaatcaaccgaagaaagtcgatatttggag
tcgattaatcgggaaacaatgtcatttgagttgctcatcagagagcaaggaactcttctg
atttcccgcgagttcaacgtagatcgagaagatgctccgcgactcaaaatttcaactaga
gatggtggtggtgctcgacgagatggagcagtagatcccagagaccagatggatccagag
gaagagttggaacggcctaaaatcatcgtagacatgcgagaattcaacagcgagttgcca
acagttctctacacaaaaggatacaatgtagttgccactacaatagagattggtgattac
attctctcgccgaacattgcaattgaaaggaaagcgttggacgatttgacacagtctttg
cagtctggaagagttttcaaacaaattgaacagatgctcgaacactacgattgcacagtc
cttttgatcgaatcgaatcggaaattcgagacaaaaatcgtgaacggcggaccattccag
ggagagctcagcaggcactgtagagagattcgatcaattttttgctctttaatttgggca
aatcccaaaatgagatgtgtttggacgatttctccgacaaattctgcagagtttttctct
gagcttaagctaagcgctccagaaccagacgtcgatcgagccatatccctgaaagctgat
caagttgaatgctcaagccaagagctcacagattctgaagcatccacctccacaaaggcg
aaaaagggaaagaaatggaaaccgaatcccactgtcatccggactttgactcaaattttt
ggaattaaagcctcagaagctcataatttgctagctaactcttcgatcaaaaccctcgct
gatctcttctcattgaacatcaccgcatctcatctctccgatttcattccatccacctct
gccgatttcatcaaagatctgtcaacattcaatttcggaagaaaataa
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