Caenorhabditis elegans (nematode): CELE_Y50D7A.2
Help
Entry
CELE_Y50D7A.2 CDS
T00019
Symbol
xpd-1
Name
(RefSeq) General transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03022
Basal transcription factors
cel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CELE_Y50D7A.2 (xpd-1)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_Y50D7A.2 (xpd-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_Y50D7A.2 (xpd-1)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_Y50D7A.2 (xpd-1)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CELE_Y50D7A.2 (xpd-1)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CELE_Y50D7A.2 (xpd-1)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CELE_Y50D7A.2 (xpd-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
Cast
nSTAND3
AAA_34
Motif
Other DBs
NCBI-GeneID:
175190
NCBI-ProteinID:
NP_001348650
WormBase:
WBGene00021752
Ensembl:
WBGene00021752
LinkDB
All DBs
Position
III:265090..283009
Genome browser
AA seq
755 aa
AA seq
DB search
MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM
ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEP
VAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFEAKSVPMQNGVWNLEDLRS
LGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNV
CIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERERAND
ERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMKDIL
DRMCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVIVEPQD
GSQLAVITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSVIASFTMTLA
RPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLYME
NVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVARGKVSE
GIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDFLTFDAMRHTAQCMGR
ALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPACTNLSIDEAAQVARRWLTLMAQ
PFEKEHQLGVSLLDKEMVHDSQIMKRFERVVEYVD
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgcaactggacattgacgggttaaaagtcctatttccgtacgattatgtgtatcccgaa
caggttttgtacatgaaggaggtcaaaaaggcgttggatgcgaggggtcatggactactg
gaaatgccgtcaggaaccggaaaaaccgtctcactactgtcattggtgttggcttatatg
atatcgtatccggataagcttgataagcttgtctattgttccagaactattccagaaatc
gaaaaatgcgtcgaagagatgaaagtactgtacgactactgggaaaaagagacaggacag
cccgttgccaagattactgtagcaatgagtgcacgcaagaatctgtgtgtaaatgagccg
gtcgctgctctaagattcggaaatacagtggattcggcttgtcagaagctcaccgccagc
tcggctcgacagaaaagagccgaagatccgacgttggaggcgtgcgattattttgaaaat
ttcgaggcgaaaagtgttccaatgcagaatggagtgtggaatttggaagacctccgttca
ctgggccgtgaaaagaagatttgtccatatttcacagctcgtcaggccatcaaccgagcc
catatcgttgtctattcctatcattatattcttgatccaaaaattgctgagcttgtttca
aaggatttcagtcgaaaatccgttgtcgtttttgatgaagcacataatatcgataatgtg
tgtattgagtcaatgtcggtcgctatttcacagaaaaatgccgatcgagcacttcaggag
ctacaaagcctggaaggtgtggtaaatcgaatgaaaagctcaaattcggaaaaacttcaa
tcggaatacgacaagctggttgaaggactgaagagaactgaacgagaacgggcaaatgat
gagaggctagcgaatcctgtgctaccggatcagattctccacgaagccgtaccgggaaac
attcgacaagccaatcacttcctcctgttcctcaaacgattcgtagaatacatccgtcac
cgcctacgcacccatcaggtgttaattgaaagtcctgccgcttttatgaaggatattctc
gatcgaatgtgtattgagagaaaaccaatgagattctgtgctgaaagattgtcgaatttg
gtaaaaactctggaaattactgataacggagatgtttgggcgctttcgcaggttacaaca
ctttgcacactggtttcgacgtattcgaaaggattttcagtaattgttgaaccacaggat
ggtagtcaactggcagttattacgctatcatgtcatgatgcttctatcgcgattcgccct
gttatgagccgatttcaatctgttattatcacttctggaaccctctcgccactggaaatg
tatccaaaagttttggatttcgacccgtccgtcatcgcatcattcacaatgacactggcc
cgcccgtgcttgagtcccctcgtagttgcacgtggaaatgaccaagtggcgatgacgtca
cgattcgagcaacgagccgacgtggcggttattcgaaattacgggaatttagtgttggaa
atggcgtcgttggtgcctgatggaatggttgtattctttacgagctatttgtatatggag
aatgttattggagtttggtacgaacagcacataatcgatgagctaatgaagtataagcta
cttttcattgaaaccaacgatgcactggaaacctcggcggcacttgaaaaatacgtggaa
gcttgtgacagtggacgtggagctgtgctcttttcagttgcacggggaaaagtttcagag
ggaattgattttagccatcatttgggtcgatgtgttataatgcttggaattccgtatatg
tacaccgagagccgagtactcagagcccggttggagtatttgagagatcaatttggaatt
aaagaaaatgattttctgacatttgacgcaatgcgacacactgctcaatgtatgggacga
gctctccgttcgaaaactgattacggattgatggtatttgctgataagagattctcccga
aacgacaaacgtggaaaattgccccgctggatgcaggaatacctggagccagcttgtacc
aatctgagcattgacgaagcggcacaagttgccaggcgttggctcacactaatggctcag
ccattcgaaaaggagcatcagctgggtgtttcgttgttggataaggaaatggttcacgat
tcgcagattatgaagagatttgaacgtgttgttgaatatgttgattag
DBGET
integrated database retrieval system
