Caenorhabditis elegans (nematode): CELE_Y46G5A.4
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Entry
CELE_Y46G5A.4 CDS
T00019
Symbol
snrp-200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_Y46G5A.4 (snrp-200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_Y46G5A.4 (snrp-200)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CELE_Y46G5A.4 (snrp-200)
Spliceosome [BR:
cel03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CELE_Y46G5A.4 (snrp-200)
Complex C
U5 SnRNP specific factors
CELE_Y46G5A.4 (snrp-200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
AAA_22
HTH_61
nSTAND3
AAA_19
PhoH
Motif
Other DBs
NCBI-GeneID:
174901
NCBI-ProteinID:
NP_001366952
WormBase:
WBGene00012896
Ensembl:
WBGene00012896
LinkDB
All DBs
Position
II:complement(12726963..12736910)
Genome browser
AA seq
2145 aa
AA seq
DB search
MADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKG
KAPVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKPRTQETKQTYEVILSFILDALG
DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFSIE
EENKPEGDGDIYENEGVNVQFDSDEEEDDGGMVNEIKGDSEEESEEEEGVDTDYTATLKG
DGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDPLIAQQKQTEVIGILKNAADDRDAE
NQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQANEKERLQIEDDMRSRPELHPILALLQ
ETDEGSVVQVEKSKRDAEKSKKAATAANEAISAGQWQAGRKMLDLNDLTFSQGSHLMSNK
RCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQS
RLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKS
LVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYN
QMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLR
VKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHS
RKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHA
GMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGAL
DIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVL
GTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKA
GLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLL
SVRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQS
AGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKN
YSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPD
FKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYY
VRIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFK
VFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMA
TKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQ
NVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGC
SASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFV
PVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLH
EGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPI
ADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIV
TKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKC
IAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMR
HKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACR
LVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVTS
VFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELENDVVTSNDNLMLAVSLE
RDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPR
PGHHKFKLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEKEED
NT seq
6438 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgagctagcccgaatccagcagtatgagtaccggcagaactccaacttggtt
ctgtcggtcgactacaatctgacggatcggcgtggcagagaggagccgactggcgaggtg
ctgccgatcacggataaggagatgcgcaaaatgaagatgggtgaccgggcgatcaaggga
aaagcgccggtgcaggatcagaagaagaagagaaagaagaaggacgacgagaaagcacaa
cagttcggccggaatgtccttgtcgacaataatgagctcatgggagcctacaagcccaga
acccaggagacgaagcagacttatgaagtgattttgtctttcattttggacgcacttggc
gatgttccacgcgaggttctgtgcggagccgctgacgaggtgcttctcacgctgaaaaac
gacaaattccgagataaagagaagaagaaagaagtggaagctcttctgggaccgctcacc
gacgatcgtatcgcagttctcatcaacttatcgaagaagatcagcgatttttcgatcgaa
gaggagaataagcctgaaggcgatggagacatctacgagaatgagggtgtaaatgtgcag
ttcgactcggatgaggaagaagatgacggtgggatggttaatgagatcaaaggtgatagt
gaggaggagagtgaagaggaagaaggtgtggatacagattacacggcaacactcaaagga
gatggtcatttgacggaagatgagcaaaaagcacgaggaattcttcatccacgtgacatc
gacgctcattggatccaaagatcgctcgccaagtacttcaaagatcctctgatcgcccaa
cagaagcaaacggaagtcatcggaattctcaagaacgccgccgacgatcgtgacgccgag
aatcagcttgtcctgctgttaggcttcgatcagttcgagttcatcaagtgccttcgccag
aatcgtcttatgatcctctactgtacacttttgcgtcaggcgaacgagaaggagcgtctc
caaatcgaagatgatatgcgatctcgtccagagcttcatccgattcttgcacttcttcag
gagactgatgagggatctgttgtgcaggtggaaaagtcgaaacgagacgcggagaagtcg
aagaaggccgccacagcagcaaatgaagccatcagtgcgggacagtggcaggcgggccgc
aagatgttggatctaaacgatctcacgttcagtcaaggatctcatttgatgagcaataaa
agatgcgagctccccgacggatcctaccgccgccagaaaaagtcctacgaagaaatccac
gtaccagccctcaaaccacgaccatttgctgaaggagagaagctcgtcagtgtctcagag
ctcccgaaatgggcccaaccggctttcgacggctacaagtcgctgaacaggatccaatcc
cgactctgtgattcagctcttcgatccaaagagcatctcttgctctgtgctccaactgga
gctggaaagacgaacgtggcgctgctcacgatgctccaagaaatcggaaaccacttggca
gaggatggaagtgtgaagctcgatgagttcaagattgtctacattgctccgatgaagtca
ctggttcaagagatggttggaagcttctcaaaacgtcttgctccattcggaatcactgtc
ggcgaaatgaccggagatgctcaaatgagcaaagagcagttcatggcgacacaagtgatc
gtttgtacgccggaaaagtatgatgtggtgacgcgaaaaggcggagagagagcctataac
cagatggttcggctgttgatcattgatgagatccatctgcttcacgatgatcgtggaccg
gtgttggagtcgatcgtcgtcagaacgattcgtcaaatggagcagaatcacgatgagtgc
cgactggtcggactttcagcaactcttccgaattatcaagatgtggcgacgttcttgcga
gtgaagcctgagcatttgcacttctttgataacagctatcgtccagttcccctcgagcaa
caatatattggagttactgagaagaaggctttgaagaggttccaggcgatgaacgaagtg
gtgtacgacaagattatggagcacgccggaaagagccaagtcctcgtttttgtgcattcc
cgaaaggaaactgcgaaaaccgcgaaagcgattcgtgacgcgtgcctcgagaaggacacg
ctgtcggcgttcatgcgtgagggctcagcgagcacagaaatcctgagaaccgaggccgag
caggcgaagaatttggatttgaaggacctcttgccgtatggattcgctattcatcacgct
ggaatgaacagagttgatcgtacactcgtcgaggatttgttcgctgatcggcatattcag
gtgctcttttcgactgcaactctcgcttggggagtcaatctgccggctcatactgtaatc
atcaagggaactcagatctataacccggaaaaaggacgttggacagagctcggagcactc
gacatcatgcaaatgctcggaagagccggacgtccacagtacgatgatcgcggagaggga
attctcatcacaaatcactcggagctccagtattatctctcgctgatgaatcaacagctt
cctgtcgagtcgcagatggtctcacggctcactgatatgctcaacgctgaggttgtgctc
ggcactgtcagtagtgtgtcggaggcgacgaattggttgggttacactttcctttttgtg
agaatgttgaagaatccgacgctttatggaattacacatgagcaagcgcgcgccgatcct
cttctagaacaacgtcgtgccgatctcatccacacagcttgcgtgcttctggacaaggcc
ggactcatcaaatatgacaagcgaagcggaatcattcaggccaccgagctcgggcgcatc
gcttctcacttctactgcacatacgagtcgatgcaaacctacaacaagctgctggtcgag
acgtgctcggatatcgatctcttcagaattttctcgatgagctccgaattcaagttgctg
tcggttcgcgatgaggagaagctggaacttcagaagatggcagagcacgcgccgattccg
atcaaggagaacctggatgaagcgtcggcgaagacgaatgtccttcttcaagcctatatc
tcacagttgaagctcgaaggattcgcgcttcaggcggatatggtcttcgtggctcagagt
gccggacgactcttcagagctcttttcgagattgtgctatggagaggttgggctgggctc
gctcagaaggtgctcactctttgcaagatggttacacaacggcaatggggatcgttgaac
ccgctgcatcagttcaagaagatcccgagcgaggtggttcgatcgattgacaagaagaac
tactcgttcgatagactgtatgacttggatcaacaccagctgggagatttgattaagatg
ccgaagatgggaaagccgctcttcaagttcattcgccagtttccgaagcttgagatgact
actctcatccagccgatcacaagaaccaccatgagaatcgagctgacaattacgccagac
ttcaagtgggatgagaaggtgcacggaagcgccgaaggtttctggatcttcattgaggat
accgatggcgagaagatccttcatcacgagttcttcctgctcaagcaaaagttctgctcg
gatgagcatgttgtgaagatgattgtgccgatgttcgatccgatgccaccactctactac
gttcggatcgtgtcggatcgatggatcggcgcggagacggtgttgccaatctcgttccgt
catttgattctgcctgagaagtaccctccaccgacagagttgctcgatctgcagccgttg
ccaatttctgcagttacgaataaggaatttcagacagtttttgctgaaagtggattcaag
gtgttcaatccgattcagacacaggtattccgcacggtcttcgaatccaacgaaaatgtg
atcgtgtgtgctccaaatggctccggaaaaaccgcaatcgccgagctcgccgttctccgt
cactttgagaatacaccagaagccaaggcagtctacattacaccaatggaggatatggcg
acaaaagtctacgcagactggaagcgacgtctcgaaccggccatcggacacacgattgtg
ctgctcaccggcgagcaaacgatggatttgaagttggctcaacgcggacagctcatcatt
tcgacgccagaacgatgggataacatctcgcggcgttggaagcagagaaaaagtgtgcag
aatgtgaagttgttcattgcggatgacttgcacatgattggtgccagcaatggggcggtg
ttcgaagtggtgtgctctcgaactcgctacatttcatctcaactcgaatctgccgtccgt
gtcgttgctctttcctcatcgctcaccaatgctcgtgatctcggaatgtggctcggatgt
tccgcgtcggcaacctttaacttcatgccgtcgactcgtccagtgccgctcgatttggag
atcaaatcgttcaatttgtcgcacaacgcgtcgagattcgctgcaatggagcgtcctgtg
tatcaggcgatttgcagacacgccggaaagttggaaccgaaaccagcgttggtttttgtt
ccagtgcgtcgtcaaacccgcccagtcgcagtagctcttctcacaatggcgttggccgac
ggagcgccgaaacgattcctccggctcgccgagcacgacgacacattccaggcgctgctg
gcggatattgaagacgaatcgctccgtgaatcagtttcctgtggagtcggtttcctgcac
gagggcaccgcgccgaaagatgtacacattgtacagcagctcttcgagagtaacgccatt
caggtgtgcgttgtgccacgtggaatgtgctatcaaatcgagatgagcgcatatctggtg
gtggtgatggatacgcagttctacaatggaaaatatcatgtttatgaggattatccgatt
gctgatatgcttcatatggttggacttgcgaatcggccgattttggattcagacgccaaa
tgcgtggtaatgtgccagacgtcgaaacgggcgtactacaagaagttcctgtgcgatccg
ctgcccgtcgaatctcatttggatcattgcctacacgatcacttcaacgctgaaatcgtc
acgaagactatcgagaataagcaagacgccattgattacctaacatggacacttctctac
cgccgaatgacacaaaatccgaactactacaatcttcaaggaaccacacatcgtcatctc
tcggatgctctttcggagctcgtcgagcttacgcttaaagacttggagaatagtaaatgt
attgcggtgaaggatgagatggacacggtctcgttgaatttgggaatgattgcctcgtac
tattatatcagttatcagacgattgagctcttctcaatgtcactgaaggagaaaaccaag
acacgcgctctcatcgagatcatctcagcatccagtgaattcggaaatgttccgatgcgt
cacaaggaggatgtgattcttcgacagctcgccgaacgccttccaggacagcttaagaat
caaaagttcacggatccccacgtcaaagtcaacttgctcattcatgctcatttgtcacgt
gtcaaactgaccgccgagctcaacaaggacacggagctcattgtgctccgcgcgtgccga
ctcgttcaggcttgcgtcgacgtgctctcttcgaatggatggttgtcgccggcgattcac
gcgatggagctctcacagatgctcacacaggcgatgtactcgaatgagccgtacttgaag
cagttaccgcattgttcggcggctcttctcgaacgagcaaaagctaaagaggtcacatct
gtctttgagcttctcgagctggaaaacgacgatcgatcggatattctgcaaatggaggga
gccgagctggccgatgtggcacgattctgcaatcattatccatcgattgaggtggccaca
gagcttgagaacgacgtggtgacgagcaacgataatctgatgttggctgtttcactggaa
cgagacaatgatattgatggactcgcaccgcccgtcgtcgcaccattgttcccgcagaaa
cgaaaggaagagggatggtggttggttattggagattccgaatccaatgcattgttgact
attaaaagacttgtgatcaacgaaaagtcgtcggttcagttggactttgccgctccacga
cccgggcaccacaaattcaagctcttcttcatctcggactcgtacctcggcgcggatcag
gaattcgacgtcgccttcaaggttgaggagccgggacgcagcaatcgcaagcgaaagcac
gagaaggaagaggattaa
DBGET
integrated database retrieval system