Escherichia coli K-12 MG1655: b3162
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Entry
b3162 CDS
T00007
Symbol
deaD
Name
(RefSeq) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eco
Escherichia coli K-12 MG1655
Pathway
eco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
b3162 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eco03019
]
b3162 (deaD)
03009 Ribosome biogenesis [BR:
eco03009
]
b3162 (deaD)
Enzymes [BR:
eco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
b3162 (deaD)
Messenger RNA biogenesis [BR:
eco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
b3162 (deaD)
Ribosome biogenesis [BR:
eco03009
]
Prokaryotic type
rRNA helicases
b3162 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-GeneID:
947674
NCBI-ProteinID:
NP_417631
Pasteur:
deaD
RegulonDB:
ECK120000209
ECOCYC:
EG10215
ASAP:
ABE-0010392
UniProt:
P0A9P6
Structure
PDB
LinkDB
All DBs
Position
complement(3305971..3307860)
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AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattccacatctg
ctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgcagcattc
tctttacctctgttgcagaatcttgatcctgagctgaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctctaaacac
atgcgcggcgtaaatgtggttgctctgtacggcggccagcgttatgacgtgcaattacgc
gccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggaccacctg
aaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggt
catcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggtatgcgcaaaaacgaagcactggtacgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaa
gtggctgaagctcttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgaacagacactggaacgcctgaaagatggtcgtctggacatcctgatt
gcgaccgacgttgcagcccgtggcctggacgttgagcgtatcagcctggtagttaactac
gatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgtactatgaagctgactattccggaagtagaactgccgaacgcagaactgctaggc
aaacgccgtctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctg
gatcaataccgcgcactgctgagcaaaattcagccgactgctgaaggtgaagagctggat
ctcgaaactctggctgcggcactgctgaaaatggcacagggtgaacgtactctgatcgta
ccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgaccgtggcccgcgtggtgaccgtgaagatcgtccgcgtcgtgaacgt
cgtgatgttggcgatatgcagctgtaccgcattgaagtgggccgcgatgatggtgttgaa
gttcgtcatatcgttggtgcgattgctaacgaaggcgacatcagcagccgttacattggt
aacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaa
gtgctgcaacactttacgcgcactcgcattctcaacaagccgatgaacatgcagttactg
ggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggc
gaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggtggccgtggtgat
ggtcgtcgttttagcggcgaacgtcgtgaaggccgcgctccgcgtcgtgatgattctacc
ggtcgtcgtcgtttcggtggtgatgcgtaa
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