Escherichia coli K-12 MG1655: b1285
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Entry
b1285 CDS
T00007
Symbol
pdeR
Name
(RefSeq) cyclic di-GMP phosphodiesterase PdeR
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
eco
Escherichia coli K-12 MG1655
Pathway
eco02024
Quorum sensing
eco02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
eco00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
b1285 (pdeR)
02026 Biofilm formation - Escherichia coli
b1285 (pdeR)
Enzymes [BR:
eco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
b1285 (pdeR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-GeneID:
945868
NCBI-ProteinID:
NP_415801
Pasteur:
yciR
RegulonDB:
ECK120003234
ASAP:
ABE-0004317
UniProt:
P77334
LinkDB
All DBs
Position
complement(1344757..1346742)
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AA seq
661 aa
AA seq
DB search
MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVI
TSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEA
HSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSG
NAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTD
SITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAI
LSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGI
ALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALEND
QLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVV
RQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIEND
ELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLV
RAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKR
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgttagggagtccacaacgttgtacaactttctcggatcgcacaatccatac
tggcggttgacggaaagcagcgatgttttgcgcttttctaccaccgaaaccacagaacct
gatcgtacattgcagttatctgccgaacaggctgctcgcatcagggaaatgacggtcatc
acctccagcctgatgatgagtctgaccgtcgatgaaagcgatctttctgtgcatctggta
ggacgaaaaatcaataaacgggaatgggctggcaacgcgtctgcatggcatgacacaccg
gcggttgctcgtgatttatcacacgggctttcctttgctgagcaggtagtttctgaagca
cattccgcaatagtgattctcgacagccgggggaatatccaacgcttcaatcggttatgt
gaagattacacagggttgaaagaacacgacgtcattgggcaaagcgtgtttaaactgttt
atgagccgtcgtgaagctgcggcatccaggcgcaataaccgtgtattttttcgaagcggc
aatgcatatgaagtcgaactgtggataccaacatgtaaaggccagcggctgtttctgttt
cgcaataaatttgtccacagcggcagtggcaaaaacgagatttttttaatctgttccggc
accgacattaccgaagagcgccgcgctcaggagcgactgcgtattctggcaaataccgac
agtatcaccggactgccgaatcgtaacgcaatgcaggatttaatcgatcacgctattaat
catgcagataacaataaagttggggttgtgtatcttgatttggataatttcaaaaaggtc
aacgacgcctatgggcatttgtttggtgaccagttattacgcgacgtgtcattggctatt
ttaagctgtctcgaacatgaccaggtgttggcgcgtccaggtggggatgagtttctggta
ctggcatccaacacctcacaaagcgcgctggaagcaatggcatcacgaattttgacccgc
ttacggctcccctttcgcattggtttaattgaagtttataccagctgttcagtaggtatt
gcactctctcccgaacatggttcagacagcacggctattattcgtcacgccgacacagca
atgtacacagcgaaggaaggcggacgaggacaattttgcgtttttaccccagaaatgaat
caacgggtatttgaatatctctggctggataccaacttgcgtaaagcactggaaaacgat
cagttggttattcactatcaaccgaaaatcacctggcgtggcgaagtgcgcagtctggaa
gcactagtacgttggcagtcacctgaacgtgggttgattccaccgttggacttcatttcc
tacgccgaagagtcagggctaattgtgcctttaggccgttgggtgattctcgatgtcgta
cgccaggtggcaaagtggcgggataaaggcataaacctgcgagtggcggtaaatatttct
gcacgtcagctcgccgatcaaaccattttcaccgccctgaaacaggttctccaggaactc
aattttgaatactgccctatagatgttgaactgacagagagttgtctgattgagaatgat
gaactggcactgtctgttattcaacaatttagccaactaggtgcgcaagtgcatctggat
gattttggtaccggctactcttcactttcgcaactggcgcgctttccgatcgatgccatc
aaacttgaccaggtttttgttcgagatattcacaaacaacctgtctcgcagtcactggtc
cgggcgatcgtcgctgtggcccaggcattgaatcttcaggtgatcgccgaaggtgtagag
agtgcaaaggaagatgcttttttaaccaagaacgggatcaatgagcggcaaggatttttg
tttgccaaaccgatgcccgccgtcgccttcgaacgctggtataaacgctatctgaagcgc
gcataa
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