Saccharomyces cerevisiae (budding yeast): YNL232W
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Entry
YNL232W CDS
T00005
Symbol
CSL4, SKI4
Name
(RefSeq) exosome non-catalytic core subunit CSL4
KO
K07573
exosome complex component CSL4
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YNL232W (CSL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YNL232W (CSL4)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
YNL232W (CSL4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
YNL232W (CSL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
ECR1_N
Motif
Other DBs
NCBI-GeneID:
855489
NCBI-ProteinID:
NP_014167
SGD:
S000005176
UniProt:
P53859
Structure
PDB
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All DBs
Position
XIV:214923..215801
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AA seq
292 aa
AA seq
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MACNFQFPEIAYPGKLICPQYGTENKDGEDIIFNYVPGPGTKLIQYEHNGRTLEAITATL
VGTVRCEEEKKTDQEEEREGTDQSTEEEKSVDASPNDVTRRTVKNILVSVLPGTEKGRKT
NKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAG
GGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDG
TNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAKPF
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcatgcaattttcagtttccagaaatagcttatccaggtaaactaatatgcccacag
tacggtacggaaaataaagatggcgaagatataattttcaattatgtgcccggtcccgga
actaaactaattcaatatgaacacaacggacgaactttagaagctataactgctacacta
gttgggacagtgaggtgtgaggaagaaaaaaaaactgatcaggaagaagagcgtgaaggc
actgatcaatctacagaggaagaaaaatcagtagatgcatcacctaatgatgtcacaaga
agaactgtaaaaaatattctggtttcagtgcttcctgggacagaaaagggtcgtaaaacc
aacaaatatgctaataatgattttgccaataacctaccgaaggaaggtgatattgtgctg
accagggtgacaaggctttcgttgcaacgagccaatgtcgaaattttagctgtggaagat
aaaccatctccaattgatagtggcatcggcagtaatggatcgggaatagtcgctgctggt
ggcggttctggagcagctacgttctctgtttctcaagcatcatcagatttaggtgagaca
ttcagaggtataatcaggtctcaggatgtacggtctacagacagagatcgtgtgaaagtg
atagaatgtttcaagccgggagatattgttagggcgcaagttttatcattaggtgacgga
accaactactatttgaccactgcaaggaatgaccttggggtcgtgttcgccagagctgct
aatggtgctggtggattgatgtatgctacagactggcaaatgatgacttcaccggttaca
ggcgctacagaaaagcgcaaatgtgccaaacctttttga
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