Saccharomyces cerevisiae (budding yeast): YLR277C
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Entry
YLR277C CDS
T00005
Symbol
YSH1, BRR5
Name
(RefSeq) cleavage polyadenylation factor subunit YSH1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
YLR277C (YSH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sce03021
]
YLR277C (YSH1)
03019 Messenger RNA biogenesis [BR:
sce03019
]
YLR277C (YSH1)
Transcription machinery [BR:
sce03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
YLR277C (YSH1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
YLR277C (YSH1)
U7-dependent histone pre-mRNA processing factors
YLR277C (YSH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
850983
NCBI-ProteinID:
NP_013379
SGD:
S000004267
UniProt:
Q06224
Structure
PDB
LinkDB
All DBs
Position
XII:complement(697156..699495)
Genome browser
AA seq
779 aa
AA seq
DB search
MERTNTTTFKFFSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSK
VDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSM
GTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVL
FTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGR
VLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDD
IRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKN
LVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEK
ISAPNIILVHGEANPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKA
VGNIVNEIYKEENVEIKEEIAAKIEPIKEENEDNLDSQAEKGLVDEEEHKDIVVSGILVS
DDKNFELDFLSLSDLREHHPDLSTTILRERQSVRVNCKKELIYWHILQMFGEAEVLQDDD
RVTNQEPKVKEESKDNLTNTGKLILQIMGDIKLTIVNTLAVVEWTQDLMNDTVADSIIAI
LMNVDSAPASVKLSSHSCDDHDHNNVQSNAQGKIDEVERVKQISRLFKEQFGDCFTLFLN
KDEYASNKEETITGVVTIGKSTAKIDFNNMKILECNSNPLKGRVESLLNIGGNLVTPLC
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggagcgaacaaatacaacaacattcaaatttttttcattgggaggaagtaacgaagtt
ggacgatcatgtcatatattgcaatataaaggtaaaacagtgatgctcgacgcaggaatt
catccggcatatcaaggattagcttcattacctttttacgatgaatttgatctttccaaa
gtcgatatcttactgatatcacatttccatttagaccatgccgcttcacttccgtatgtg
atgcaacggactaactttcaaggcagagttttcatgacacatccaaccaaagccatttac
agatggctactgcgagattttgtaagagttactagtataggttcttcatcctcctctatg
gggactaaagacgaaggtctattctcagatgaggatttagttgattctttcgataaaatt
gaaacggtggactatcattctactgttgacgtcaatggtatcaaatttacggcattccat
gcaggccatgtattgggtgcagcgatgtttcaaatagagattgctggccttagggtgtta
ttcacaggtgactattcgagagaagtagatcgtcacttaaattctgctgaggtgcctcca
ctttcatccaacgtattaattgtggaatctacctttggtaccgctactcacgagccccgt
ttaaatagagaaaggaagctaacccaactaatccattccacagtgatgagaggaggccgt
gttctactgcctgtttttgctttagggagagctcaagaaatcatgcttatactggatgag
tactggtctcaacatgctgatgaactcggtggtggacaagtcccaatattttatgcatca
aatttggcaaaaaaatgtatgagcgtttttcaaacctatgtaaatatgatgaatgatgac
attagaaaaaaatttagagactctcagactaatcccttcatattcaaaaatatatcttat
cttagaaacttggaggatttccaagattttggtcccagtgtgatgttggcctcaccaggt
atgctgcaaagtgggttatcaagagatttacttgaaaggtggtgccctgaagataaaaat
ctagtactaatcaccggttactccatcgaaggaacaatggcgaaatttattatgcttgag
ccagatacaataccttccataaataatccggaaataaccattccaagacgttgtcaagtt
gaagaaatctcctttgccgcacacgttgacttccaggaaaatttagaatttattgaaaag
attagtgcgccaaatatcatccttgttcatggagaagccaatcccatgggccgtttgaaa
tctgcattgttatccaatttcgcgtctttaaagggtacagataatgaagtccatgttttt
aatcctagaaactgtgttgaagtagatcttgaatttcaaggtgtcaaggttgcaaaagct
gtgggaaatattgtgaacgaaatatataaagaagaaaacgtagagataaaggaagaaatt
gcggctaaaattgaacctataaaggaagaaaacgaagacaacttggattctcaagcagaa
aaaggtttggttgatgaagaggaacacaaagacatagtcgtttctgggattctagtttca
gatgacaaaaatttcgaattagacttcctttctttgtctgatttaagagagcaccatccc
gatctttctacaacgatattaagagagcgccagtcagttcgtgtaaattgtaaaaaggag
ctaatttactggcacattttacaaatgtttggagaggctgaagttcttcaagatgatgat
agagtaacaaatcaagaaccaaaggttaaagaagagtcaaaagacaatctgaccaataca
ggtaaattgattctacagataatgggtgatattaagttaactattgttaatactctagcc
gttgtggaatggactcaagatttaatgaatgacactgtagcagactccattattgctata
cttatgaatgtggattcagctcccgccagtgtcaagctttcgagtcattcttgtgatgat
catgatcataacaatgtgcagtctaatgcacaaggtaagattgatgaagttgagagggtg
aagcaaatctcaaggttgtttaaagaacagtttggtgactgttttactttatttctcaat
aaagatgaatatgcaagtaataaagaggaaactataactggagtggttaccataggtaaa
agcactgctaagattgacttcaacaatatgaaaattttagaatgtaattcaaatcctttg
aaaggtagggtggaaagcctcttaaatattggtggtaatttggtcacaccgctatgttaa
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