Saccharomyces cerevisiae (budding yeast): YJL050W
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Entry
YJL050W CDS
T00005
Symbol
MTR4, DOB1
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YJL050W (MTR4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YJL050W (MTR4)
03041 Spliceosome [BR:
sce03041
]
YJL050W (MTR4)
03009 Ribosome biogenesis [BR:
sce03009
]
YJL050W (MTR4)
03016 Transfer RNA biogenesis [BR:
sce03016
]
YJL050W (MTR4)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YJL050W (MTR4)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
YJL050W (MTR4)
Spliceosome [BR:
sce03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
YJL050W (MTR4)
Complex C
U4/U6.U5 tri-SnRNP related factors
YJL050W (MTR4)
Ribosome biogenesis [BR:
sce03009
]
Eukaryotic type
Pre-60S particles
Helicases
YJL050W (MTR4)
Transfer RNA biogenesis [BR:
sce03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
YJL050W (MTR4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DUF4047
RE_AspBHI_N
HTH_Tnp_ISL3
Death_3
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
853397
NCBI-ProteinID:
NP_012485
SGD:
S000003586
UniProt:
P47047
Structure
PDB
LinkDB
All DBs
Position
X:342522..345743
Genome browser
AA seq
1073 aa
AA seq
DB search
MDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENK
KIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVR
HQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVV
AEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTE
ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM
EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI
SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE
ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL
PILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM
SGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGIS
PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDV
RQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVN
VVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKD
IRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPL
TNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDI
IELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELA
EPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVY
EGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggattctactgatctgttcgatgttttcgaggaaacacctgttgagcttcctacagat
agtaatggagaaaaaaatgctgatacaaacgtaggagatactccagatcatacccaggat
aagaagcatggccttgaagaagaaaaagaagagcatgaggaaaacaacagtgaaaataaa
aaaatcaaatccaataagagcaaaacggaagataaaaacaaaaaagttgtagtaccagtg
ttggcagattcgttcgaacaagaagcctctagagaagtggatgcatcgaaaggactgaca
aattcagaaaccttacaagttgagcaagacggtaaagtcagattatcgcatcaggtccgc
caccaggttgcactaccaccgaactatgattatacgcctatcgctgagcataagagggta
aatgaggctcgtacatatccattcacattagaccctttccaggacactgcaatctcatgt
atagatagaggcgaatctgtgttggtttctgcgcacacatcggctggtaaaacagttgtg
gctgaatatgccatcgcacaatctttaaaaaataagcaaagagtcatttatacctctcca
attaaggctctatcaaaccaaaaatacagagaacttttagcagaatttggagatgtcggt
ttgatgactggtgatatcacgatcaatccggatgcaggctgtttggtcatgaccactgag
attttgagaagtatgttatatagaggcagtgaagttatgagagaagttgcctgggtcatc
tttgatgaagtgcattacatgagggataaagaaagaggtgttgtgtgggaagaaacgatt
attttactgccagataaggtccgttacgtgtttttatcggccaccattccaaatgcaatg
gagtttgctgaatggatatgcaaaattcattctcagccatgtcatattgtctacacaaat
ttccgtccaactcctttacaacattacctgtttccagcccatggagatggtatttatctg
gtggttgacgaaaaaagtaccttcagagaggaaaatttccaaaaagcaatggcgtccata
agtaaccagataggtgatgatccaaattccactgattcaagaggtaaaaagggtcaaacc
tataaaggtggctccgctaagggtgacgcaaaaggtgacatttataagatagtgaaaatg
atttggaagaaaaagtacaatccagtgattgtattttcgttcagtaaacgtgattgtgaa
gaattagcattgaagatgtctaaattagattttaattctgatgatgaaaaggaggctttg
acgaagatttttaacaatgccattgcactattaccagagacagacagagagctaccccaa
attaaacacattttaccattattaagaagaggtatcggtattcatcattccggtttactg
cccattttgaaggaagtcattgaaattctgtttcaagagggatttttgaaggtgttgttt
gcaacagaaacattttcgattggattaaacatgcctgctaaaactgttgtctttacatcg
gtcagaaagtgggatggtcaacaattccgctgggtttcaggtggagaatatatacaaatg
tctggtcgtgcaggtcgtcgtggtttagatgatcgtggtattgttattatgatgattgat
gaaaaaatggaacctcaagttgctaaaggaatggttaagggccaagcagataggctagac
tcggcttttcacttaggatataatatgattttgaacttaatgagagttgaaggtatctct
ccggagtttatgttggagcattctttcttccaatttcaaaacgttatttcagtaccagtt
atggaaaagaaacttgctgaactgaaaaaagactttgatggcatcgaagtcgaagatgaa
gaaaatgttaaagaataccatgagattgagcaggctatcaaaggttaccgtgaagatgtt
cgtcaagttgtcacccatccggcaaacgccttaagtttcctacaaccaggcagattagtt
gaaatctctgtcaatggtaaggataactatggctggggtgctgttgtcgattttgctaaa
agaattaacaaacgcaacccaagtgctgtctatacagaccatgaatcctatattgtcaat
gtggtcgtcaataccatgtatatagactctccagtcaacttgttgaaacctttcaaccct
accttaccagaagggattcgcccagcggaagaaggtgaaaaaagcatatgtgctgttatt
cccataactttggattcaatcaagtcgattggtaatttgagactatatatgcccaaagat
attagagccagcggtcaaaaagaaactgttgggaagtctttaagggaggttaatcggagg
ttcccggatggtattcccgtgctggatcctgttaaaaacatgaagatcgaagatgaggac
tttttaaagctaatgaagaagattgacgttttaaacacaaagttatcctccaatccctta
accaattccatgagactagaagaactatatggtaaatatagtagaaaacacgatttacat
gaagatatgaaacaattgaaacgcaaaatttcagaatcacaagccgtaatccaactggac
gatcttcgtcgccgtaaaagagttttgcgccgtttaggattttgtactcctaatgacatt
attgaactgaaaggtagagttgcatgtgaaatatctagtggtgatgaactgttactaaca
gaattgatcttcaatggtaatttcaatgagttgaaaccggaacaagcagcagcattatta
tcatgctttgcattccaagaacgctgtaaagaagcgcctagattgaaaccagagcttgcc
gaacctttgaaggctatgagagaaattgcagcaaagatcgctaagataatgaaggattct
aaaattgaagttgtagaaaaggactacgttgaaagcttcagacatgaactaatggaagtt
gtttacgaatggtgtagaggagctacttttacgcaaatctgtaaaatgaccgacgtttac
gaaggttcgttgatcagaatgttcaagagattagaggaattggtgaaggagctggtagac
gtcgccaataccattggtaactcttcacttaaggagaagatggaagctgtcttgaaatta
attcatagagatatcgtatctgctggttctttgtatttatag
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integrated database retrieval system
