Saccharomyces cerevisiae (budding yeast): YKR086W
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Entry
YKR086W CDS
T00005
Symbol
PRP16, PRP23, RNA16
Name
(RefSeq) DEAH-box RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
YKR086W (PRP16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sce03041
]
YKR086W (PRP16)
Enzymes [BR:
sce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
YKR086W (PRP16)
Spliceosome [BR:
sce03041
]
Complex C
Other components
Step II factors
YKR086W (PRP16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
ATPase
ResIII
PhoH
IstB_IS21
ABC_tran
SLFN-g3_helicase
SRP54
AAA_24
T2SSE
Herpes_ori_bp
Sigma54_activat
AAA_16
Motif
Other DBs
NCBI-GeneID:
853961
NCBI-ProteinID:
NP_013012
SGD:
S000001794
UniProt:
P15938
Structure
PDB
LinkDB
All DBs
Position
XI:599857..603072
Genome browser
AA seq
1071 aa
AA seq
DB search
MGHSGREERIKDIFKELTSKELTPGLLLTLQKLAQKPNTNLEQFIASCKALTKLSSNNPI
IFNELLELLKNKSEEDSTGPKKIAPSINKRKKFKIQLDLDDNEDELDSPVQKKPAPTRTL
FKRIDKLKAKQLRQYSPTVKDPSPNSEQQTQNGHAETKDYEPTRSEVVEEDREWYDNDDD
YGNLVPEPLSELPEEAKLLPVIRNIDNDDALRNTVQLYPIPLKQRMEWIPPFLSKFALEN
KVPTSIIIGSISETSSQVSALSMVNPFRNPDSEFSANAKRGSKLVALRRINMEHIQQSRD
NTTVLNTAMGEVLGLENNNKAKDKSNQKICDDTALFTPSKDDIKHTKEQLPVFRCRSQLL
SLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVVTQPRRVAAISVAKRVAME
MQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDDTLDKYSCVIIDEAHERSL
NTDILLGFFKILLARRRDLKLIITSATMNAKKFSAFFGNAPQFTIPGRTFPVQTIYTSNP
VQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKFGTANF
EEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSK
LKVYNPKIGLDSLVITPISKANADQRSGRAGRTAPGTAYRLYTEDTFKEDMYLQTIPEIQ
RTNLSNTLLLLKSLDVTDELSKFPFIDKPPLQTFLSSLYELWFIGAIDTSGQLTPLGLQM
AKFPLQPSLSKILLIAVRNGCSDEMLTIVSMLSVPQVFYRPKERQKEADIARNKFFIAKS
DHLTLLNVFEQWRANNFSSHWCNKHFVQYKSLVRARDIRDQLLTILKSQKIPVISSGKDW
DIIKKCICSGFAHQAAKITGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMTS
KEYICCVTSVDPFWLMEYGGLLYDIKRIKNDQEATTTGLFGEHYEHTLDKVEDDIDINIR
RCKDMRDSVIQELKMTDNSNKEDKKQKTKKQNILNGKENSMKPFKRRKPFF
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgggtcattcggggcgtgaggaaaggataaaagacatatttaaggaacttacgtcaaaa
gaactaacgcctgggttgcttttgacactgcagaaactagcgcaaaagccgaatactaat
ctagaacagtttattgccagctgtaaagctttgacgaaactcagcagtaacaatccaatc
atttttaatgaacttctggagctcctcaagaataaatctgaagaggactcgacaggccca
aagaaaatcgccccttctataaataagagaaagaaatttaagatccagttagaccttgac
gataatgaagatgagctagattctccagttcaaaaaaaaccagcacctacacggacgttg
ttcaagagaatagataaactaaaggccaaacagttgaggcagtattcgcccaccgtgaag
gatccttctccaaatagtgaacagcaaacacagaatggtcatgctgaaacgaaggactat
gaaccgactcgaagcgaagtagttgaggaggacagagaatggtatgataatgatgatgat
tatggaaatttggtgcctgaacctctgtctgaattgcctgaggaagcgaaactactacct
gtcattaggaatatcgacaacgatgatgccttacgaaataccgttcaattataccccata
ccactcaagcaaagaatggaatggatccctccttttttatcaaagtttgctcttgaaaac
aaagtgcccacttccataattatcgggtccatctctgagacgtccagccaagtatccgct
ttatcaatggtgaatccatttaggaatcctgacagtgaattttctgcgaacgccaaacga
ggtagtaagctggttgccttgagaaggataaacatggaacatattcaacaatctcgagac
aacaccactgttttgaacactgccatgggggaagtactaggcttggagaataacaataaa
gcaaaagataagagcaaccaaaagatttgcgacgatacagctcttttcacgccatcaaaa
gatgacattaaacatactaaagagcaactgcctgttttccgctgcagatctcaattgtta
tcattgataagagaaaatcaagtagtggtgataattggtgaaacgggctcaggtaaaacc
acgcaacttgcacagtatttatatgaagaaggatatgccaacgatagggggaaatctatt
gttgtcacacagccgagaagagtagcagccatatccgttgcaaaaagggttgcaatggaa
atgcaagttccattgggtaaggaagtaggctattctataaggtttgaagatgtgacggat
tctgagtgtacaaaacttaagtttgtaacggatggtattctactcagagagaccttattg
gatgatacactcgataaatattcgtgtgttattattgatgaagctcatgaaaggtcatta
aatacagacattttactaggttttttcaagattttattagcacgtagaagagatctaaaa
ctcataatcacttcagcaacaatgaatgcgaagaagttctccgcattttttggtaatgct
cctcagttcacaattcctggaagaactttccccgtacagaccatatatacttccaaccct
gttcaagactacgtagaagctgcagtttctcaggctgtgaaaattcatttagcaaacgat
tgttcaagcggtgatattctcattttcatgacaggtcaagaagatattgaaacaacgttc
gacactctgcaagaaaagtttttgcaagtatattctaaaaagtttggtaccgcaaacttt
gaagagatcaatgatattgaaattttaccaatctactcggctttacctgcagatttgcaa
ttcaaaatttttcaggatctacatggcactaaaaggaaaattataattgcgacaaatatt
gcagagacttcattgaccattaaaggtattagatatgtcattgattgtggttactctaaa
ctgaaagtttacaatccaaagattgggcttgatagtttagtaataacgcccatatcaaaa
gctaacgccgaccaaagatccggaagagcgggaagaactgcgccaggcactgcatatcga
ttatacacggaagatacattcaaagaagatatgtacttacagacaatacctgagatccaa
agaacgaatttgtcaaacacccttttactgctaaaatctctggacgttactgacgaattg
agtaagttcccgttcattgataaaccacccttacaaacatttttatcctcattgtatgag
ttatggttcataggggctatagacactagtggacaattgactccattgggattacagatg
gcaaaatttcccctgcaaccttccctttccaaaattttattaattgcagttagaaacggc
tgcagtgatgaaatgttaacaatagtttccatgctttctgttccacaagtcttttataga
cccaaggaaagacagaaagaagcagatattgctagaaataaattttttatcgcgaaatca
gatcacttaacgttacttaatgtttttgaacaatggagggcaaataattttagttcgcat
tggtgtaacaaacattttgttcaatacaaatcacttgtcagggcaagagacattcgagac
cagttgctaacaatactaaaatctcaaaaaattccggtcatttcctccggtaaggactgg
gatattattaaaaaatgtatttgttcaggatttgctcatcaagcagccaaaataacagga
ctacgaaattacgttcatttaaaaactggcgtaagtgttcaactacaccctacaagtgca
ttacacggattgggggatttacccccttacgtggtatatcatgaattattaatgactagc
aaagaatacatttgttgtgttacttctgtagatccattctggttaatggaatatggtggg
ttactctacgacatcaagcgtattaaaaatgatcaggaggccacaactacaggcctcttt
ggtgaacactatgaacatactctggacaaggttgaagatgatattgatatcaatattagg
agatgtaaggatatgagagacagtgtgatacaggagctcaaaatgaccgacaattcaaac
aaagaagacaaaaagcaaaaaacgaaaaagcaaaatatactgaacggcaaagaaaattca
atgaaacctttcaaaagaaggaagccttttttttag
DBGET
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