Saccharomyces cerevisiae (budding yeast): YOR048C
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Entry
YOR048C CDS
T00005
Symbol
RAT1, HKE1, TAP1, XRN2
Name
(RefSeq) ssRNA exonuclease RAT1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03008
Ribosome biogenesis in eukaryotes
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
YOR048C (RAT1)
09123 Folding, sorting and degradation
03018 RNA degradation
YOR048C (RAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sce03021
]
YOR048C (RAT1)
03019 Messenger RNA biogenesis [BR:
sce03019
]
YOR048C (RAT1)
03009 Ribosome biogenesis [BR:
sce03009
]
YOR048C (RAT1)
03016 Transfer RNA biogenesis [BR:
sce03016
]
YOR048C (RAT1)
Transcription machinery [BR:
sce03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
YOR048C (RAT1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
YOR048C (RAT1)
Ribosome biogenesis [BR:
sce03009
]
Eukaryotic type
Pre-60S particles
RNases
YOR048C (RAT1)
Transfer RNA biogenesis [BR:
sce03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
YOR048C (RAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
854213
NCBI-ProteinID:
NP_014691
SGD:
S000005574
UniProt:
Q02792
LinkDB
All DBs
Position
XV:complement(418630..421650)
Genome browser
AA seq
1006 aa
AA seq
DB search
MGVPSFFRWLSRKYPKIISPVLEEQPQIVDGVILPLDYSASNPNGELDNLYLDMNGIVHP
CSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRS
ARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWTAF
KLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQDNRKRNNLKDTINMTEEEKQFLQKQNSEQPFLWLHINVLREY
LSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLP
KLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEARKKEAFERRKAQKNMSKGQD
RHPTVATEQLQMYDTQGNLAKGSWNLTTSDMVRLKKELMLANEGNEEAIAKVKQQSDKNN
ELMKDISKEEIDDAVSKANKTNFNLAEVMKQKIINKKHRLEKDNEEEEIAKDSKKVKTEK
AESECDLDAEIKDEIVADVNDRENSETTEVSRDSPVHSTVNVSEGPKNGVFDTDEFVKLF
EPGYHERYYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAPL
ATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIIDFYPEE
FPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLISNKNAN
YERFSKKLYSKENNNNNVVVKFQHFKSGLSGIVSKDVEGFELNGKIVCPIQGGSLPNLST
TLILKMSYRLIPLPSRNKSIILNGFIPSEPVLTAYDLDSIMYKYNNQNYSRRWNFGNDLK
QNIVPVGPKGITQYKPRTGGYRAFFYFAELSRNNVQPAHNYGRNSYNSQPGFNNSRYDGG
NNNYRQNSNYRNNNYSGNRNSGQYSGNSYSRNNKQSRYDNSRANRR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgtcatttttcagatggctatctcgaaaatatccaaagatcatatcccca
gtattggaagagcaacctcagatagtcgacggtgtcatattgccgttggattattccgcc
tcaaatccaaacggtgagttagacaacttgtatttggatatgaatggtattgttcatcca
tgttcgcacccagaaaacaaaccgcctccagagactgaagatgaaatgcttttggcagtt
tttgaatataccaatcgtgtgttaaatatggctagaccacgcaaggtacttgttatggct
gttgatggtgttgctcctcgtgccaaaatgaaccagcagagagcgcgtagatttaggagt
gctagggatgctcagattgaaaacgaagccagggaagaaattatgagacagcgagaagaa
gttggtgagataatcgatgatgccgtcaggaacaagaaaacttgggattcaaatgcgatc
actccaggcaccccatttatggataagcttgccgcggccctccgttattggacagcattt
aaactggccactgaccctggttggaaaaacctgcaggtgattatcagtgacgccaccgtc
ccaggtgaaggtgagcacaaaataatgaatttcattaggtctcaaagagctgatcctgaa
tataatcccaacacaacgcactgtatatacggtttggatgctgatttaatttttttgggc
cttgccactcatgaaccacattttaaaattctaagagaagatgtttttgctcaagacaat
cggaaaagaaataacttaaaagatactataaatatgactgaagaagaaaaacaatttctc
caaaaacaaaattccgaacaacctttcttgtggctgcacataaatgttttgagggaatac
ttgtccgctgagttatgggttccgggtcttccatttacatttgatttagaaagggctatc
gacgattgggttttcatgtgctttttctgtggtaatgactttttaccacatttaccatgc
ttagatgtcagagaaaatagtattgatattctcttggatatttggaaggtagtactaccg
aaattgaaaacgtacatgacctgcgacggtgtcttgaacctcccttctgttgaaacgcta
ttgcaacaccttggctcccgtgagggggatatcttcaaaactagacatattcaagaagcc
agaaagaaagaagcttttgaaagaaggaaagcgcagaaaaatatgtcaaaaggtcaagac
aggcatcctacagtagctacggagcaactgcaaatgtatgacacacaaggaaatttagca
aaaggttcatggaacttgaccaccagtgatatggtaaggttgaaaaaggaactgatgctt
gcgaacgaggggaacgaagaagcaatcgccaaagttaagcaacagagtgataagaacaat
gaactgatgaaagatatcagcaaggaagaaattgatgatgctgttagtaaggctaacaaa
actaattttaaccttgcagaagttatgaaacagaaaataataaataagaaacaccgtctt
gaaaaggataatgaagaggaagaaattgctaaggatagcaaaaaagttaagacagagaaa
gcggaatcagagtgcgatctcgatgcagagatcaaagatgagattgtggctgacgtaaac
gacagggaaaactctgaaactacagaagtatcaagagattcaccagtccacagcacagtg
aatgtcagcgaaggtcccaaaaatggggtctttgatacagatgaatttgtcaaactattc
gaacctggttaccacgaaagatattacacagctaaatttcacgttactcctcaagatatt
gaacagttaagaaaagatatggtaaaatgctatatcgaaggggtcgcctgggtactaatg
tattactatcaaggttgtgcctcttggaattggttctatccgtaccattatgctcctctg
gcaacagatttccatgggttttctcacttggagataaagttcgaagaaggtactccattt
ttaccttacgaacaattgatgagtgttttaccagctgcatctggccatgctttgccaaaa
attttccggtctttgatgtctgaacctgactctgaaatcattgatttttatcctgaagaa
tttcccatagatatgaatggtaagaagatgtcctggcaaggcatagcgttgctaccattc
atcgatcaggatagactgttaacagctgttcgtgcacaatatcctttactttctgatgct
gagagggcaagaaatattcgcggagaacctgttttattaataagtaacaagaatgctaat
tatgagaggttttcgaagaaattatactcaaaggaaaacaacaacaacaatgttgttgtg
aagtttcaacacttcaagagtggtttaagtggtattgtatcaaaggacgttgaaggtttc
gaattaaatgggaaaattgtatgtccgattcaaggtgggtcactgccaaatttatctacc
accttgattttaaagatgtcctatagattaattccgttgccatcgagaaataagtctatt
atactgaacgggttcattccgtcagaaccggtactaacagcatatgaccttgattccata
atgtacaagtataataaccaaaattactcccgtcgctggaactttggtaatgatttgaag
caaaatattgttccagtaggaccaaagggtattactcagtacaaaccaagaactggtggc
tatcgagcattcttttattttgctgagctcagtagaaataatgtccaacccgcccacaac
tatggtaggaatagctacaacagtcaacccggcttcaacaatagcaggtatgatggtgga
aacaataattacagacaaaattcaaattacaggaacaataactattccggaaatagaaat
agtggacagtacagcggcaacagctactctcggaataacaagcaaagtcggtatgacaat
tcaagagcaaataggcgttag
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