Saccharomyces cerevisiae (budding yeast): YCR093W
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Entry
YCR093W CDS
T00005
Symbol
CDC39, NOT1, ROS1, SMD6
Name
(RefSeq) CCR4-NOT core subunit CDC39
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YCR093W (CDC39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YCR093W (CDC39)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
YCR093W (CDC39)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
YCR093W (CDC39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_HEAT_N
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
TFIIA
Motif
Other DBs
NCBI-GeneID:
850455
NCBI-ProteinID:
NP_010017
SGD:
S000000689
UniProt:
P25655
Structure
PDB
LinkDB
All DBs
Position
III:280117..286443
Genome browser
AA seq
2108 aa
AA seq
DB search
MLSATYRDLNTASNLETSKEKQAAQIVIAQISLLFTTLNNDNFESVEREIRHILDRSSVD
IYIKVWERLLTLSSRDILQAGKFLLQENLLHRLLLEFAKDLPKKSTDLIELLKERTFNNQ
EFQKQTGITLSLFIDLFDKSANKDIIESLDRSSQINDFKTIKMNHTNYLRNFFLQTTPET
LESNLRDLLHSLEGESLNDLLALLLSEILSPGSQNLQNDPTRSWLTPPMVLDATNRGNVI
ARSISSLQANQINWNRVFNLMSTKYFLSAPLMPTTASLSCLFAALHDGPVIDEFFSCDWK
VIFKLDLAIQLHKWSVQNGCFDLLNAEGTRKVSETIPNTKQSLLYLLSIASLNLELFLQR
EELSDGPMLAYFQECFFEDFNYAPEYLILALVKEMKRFVLLIENRTVIDEILITLLIQVH
NKSPSSFKDVISTITDDSKIVDAAKIIINSDDAPIANFLKSLLDTGRLDTVINKLPFNEA
FKILPCARQIGWEGFDTFLKTKVSPSNVDVVLESLEVQTKMTDTNTPFRSLKTFDLFAFH
SLIEVLNKCPLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKE
MQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALA
TTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPESKMFKFAVQAIYAFRIRLAEYPQY
CKDLLRDVPALKSQAQVYQSIVEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEG
APKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYS
KVIVAMGSGLLHQFMVNVTLRQLFVLLSTKDEQAIDKKHLKNLASWLGCITLALNKPIKH
KNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFKPPNPWTVGILKLLIELNEKAN
WKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEVIETLSGALGSITLEQQQTEQQRQIIL
MQQHQQQMLIYQQRQQQQQQRQQQQQHHISANTIADQQAAFGGEGSISHDNPFNNLLGST
IFVTHPDLKRVFQMALAKSVREILLEVVEKSSGIAVVTTTKIILKDFATEVDESKLKTAA
IIMVRHLAQSLARATSIEPLKEGIRSTMQSLAPNLMSLSSSPAEELDTAINENIGIALVL
IEKASMDKSTQDLADQLMQAIAIRRYHKERRADQPFITQNTNPYSLSLPEPLGLKNTGVT
PQQFRVYEEFGKNIPNLDVIPFAGLPAHAPPMTQNVGLTQPQQQQAQMPTQILTSEQIRA
QQQQQQLQKSRLNQPSQSAQPPGVNVPNPQGGIAAVQSDLEQNQRVLVHLMDILVSQIKE
NATKNNLAELGDQNQIKTIIFQILTFIAKSAQKDQLALKVSQAVVNSLFATSESPLCREV
LSLLLEKLCSLSLVARKDVVWWLVYALDSRKFNVPVIRSLLEVNLIDATELDNVLVTAMK
NKMENSTEFAMKLIQNTVLSDDPILMRMDFIKTLEHLASSEDENVKKFIKEFEDTKIMPV
RKGTKTTRTEKLYLVFTEWVKLLQRVENNDVITTVFIKQLVEKGVISDTDNLLTFVKSSL
ELSVSSFKESDPTDEVFIAIDALGSLIIKLLILQGFKDDTRRDYINAIFSVIVLVFAKDH
SQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHA
LQPFAFPGFSFAWVTLLSHRMLLPIMLRLPNKIGWEKLMLLIIDLFKFLDQYTSKHAVSD
AVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQLKNVILSAIPKNMTVPNPY
DVDLNMEDIPACKELPEVFFDPVIDLHSLKKPVDNYLRIPSNSLLRTILSAIYKDTYDIK
KGVGYDFLSVDSKLIRAIVLHVGIEAGIEYKRTSSNAVFNTKSSYYTLLFNLIQNGSIEM
KYQIILSIVEQLRYPNIHTYWFSFVLMNMFKSDEWNDQKLEVQEIILRNFLKRIIVNKPH
TWGVSVFFTQLINNNDINLLDLPFVQSVPEIKLILQQLVKYSKKYTTSEQDDQSATINRR
QTPLQSNA
NT seq
6327 nt
NT seq
+upstream
nt +downstream
nt
atgctatcggccacataccgtgatttgaacacagcatctaatttagaaacatcaaaggaa
aaacaggccgctcaaatcgtcattgcacaaattagtttattattcacgactcttaacaac
gacaattttgaatccgtggaaagagaaattagacatattttagacaggtcgtccgtagat
atttacataaaagtttgggaacgattattaaccttaagttctcgggatattttacaagcg
ggaaaatttttacttcaagaaaatctactacacagactactattagaatttgcgaaggat
ttaccgaagaaaagcacagaccttattgagcttttgaaagaacgaaccttcaataaccag
gagtttcaaaaacaaacaggaattacattatcacttttcattgatctatttgataaatct
gcaaacaaggacattatagagtcacttgaccgctcctctcagattaacgatttcaagaca
attaagatgaatcatacaaattatttaaggaatttttttcttcaaaccacaccagaaaca
ctagagtccaatctacgcgacttattgcattccttggaaggtgaaagtctaaatgactta
ttagctcttttactgtccgaaatactttcacctgggtctcagaatttacaaaatgatccc
acacggagttggttgacacctccgatggttttagacgcaacgaaccgtgggaacgttata
gcaagatctataagttctctgcaagccaaccagataaattggaatcgtgtgtttaattta
atgtcaacaaagtatttcttgagcgcaccattgatgcctactacagcatctttgagttgc
ttatttgcagcattgcacgatggtccagttattgatgaatttttcagttgcgactggaaa
gttattttcaaactagatttggccattcaacttcataagtggtcggtacagaatggttgc
tttgacttattaaatgcagaaggtaccaggaaagtttctgaaaccatcccaaacacaaag
caatctttactctacttattatccattgcatcattgaatttagaattgttcctacaaagg
gaggaattgtctgatggtcctatgctagcttattttcaagagtgcttctttgaagatttc
aactacgcccctgaatatcttattttagcattagtcaaagaaatgaagcggttcgtttta
ttgatagaaaacaggacagtcatagacgaaatacttattaccttattgattcaagtgcat
aataaatcaccgtcatcgttcaaggacgttatttctacaataaccgatgattctaaaatc
gtagatgcagcaaaaatcataatcaactcggatgacgcacctattgccaactttttaaaa
tcgttgttagatacgggaagattagatacggtcattaataaacttcctttcaatgaagct
tttaaaattttgccatgcgcaagacaaattggttgggaggggttcgatactttcttaaaa
acaaaagtttctccatctaatgtcgatgtagtgctggaatcactagaggttcaaacgaaa
atgactgatacaaacactccatttaggtcattaaagacatttgacttattcgcttttcat
tcattaattgaagtactgaacaaatgcccactagatgttctccaattacaaaggtttgaa
tccttggaattttccttattaattgcatttcctagattgatcaattttggttttggacac
gatgaagctattttagccaatggtgacatcgcagggattaataatgatattgaaaaggag
atgcagaactatttacagaaaatgtatagtggtgagttagccattaaagatgtaatcgaa
cttctgagaaggttaagagatagcgacttgccaagggaccaggaagtcttcacatgtatt
acccatgccgttatagcagaatcgacattcttccaagattatccattggatgcattggct
actacatctgttctttttggatccatgattctctttcaactgttacgtggattcgtatta
gacgtcgcatttaggataatcatgaggtttgccaaggagcctccagagtccaagatgttt
aagtttgctgtacaagctatttatgcatttaggatacgtttggccgaatatccacagtat
tgtaaggacctcttgagagatgttccggctttgaagtctcaggctcaagtttaccaatct
atcgtcgaagctgctaccctagcaaatgctccaaaggaaaggtcaagacccgtccaggaa
atgatcccattaaaattttttgctgtagatgaagtttcatgtcagatcaatcaagaaggt
gctcctaaagatgtcgtagaaaaagttctttttgttctcaacaacgttactctggctaac
ttgaataataaggttgatgaattgaaaaaaagtttgacaccaaattatttttcttggttt
tccacatatttagttacgcaaagggctaaaacagaacctaactatcatgatctttatagc
aaggttatagttgctatggggtcagggttgctacatcagttcatggtcaacgttactttg
agacaattatttgtcctactatctacaaaagacgagcaagccatcgataaaaagcaccta
aagaatttggcttcatggttaggatgtatcacattagctttgaataaaccaattaaacac
aagaatatcgcattcagggaaatgttaatcgaagcttataaggaaaatagacttgaaata
gttgtgccttttgtaacaaagattttacaaagggcttctgaatcaaaaattttcaagcct
ccaaatccctggactgttggcatattaaagctgttgattgagttgaacgaaaaagcaaac
tggaaattaagtttgactttcgaagttgaggttttattaaaatcttttaatttgaccacc
aaatctctcaagccctcgaatttcatcaatactccggaagttatagaaactttatccggt
gctttgggatcaatcactctggagcaacaacaaacagagcaacaaaggcaaattatacta
atgcaacaacaccagcaacagatgctaatatatcaacagagacaacaacaacaacaacaa
aggcaacaacaacaacaacatcatattagtgcaaatacaatcgcagaccaacaagcggca
tttggcggcgagggttcaatttcacacgacaatccttttaacaacttacttggttctact
atttttgtaacccaccctgacttgaagagggtatttcaaatggctttagccaagtcagtt
cgcgaaattttgttggaagtagtcgaaaagtcatcaggaattgctgttgttacgacgaca
aaaataatacttaaagactttgccactgaagttgatgagtctaagttgaagacggctgca
atcattatggtaaggcatttggcacaaagtttagctcgagctacttcaattgaaccattg
aaagaaggcatacgttctactatgcaatcactagcaccgaatttaatgtctctttcttct
tcacctgcagaggagcttgacacggcaataaatgaaaatattggcattgctctagttttg
attgagaaagcatctatggacaagtctactcaagatttagcagaccaattgatgcaagcg
attgctattcgtcgttatcacaaggaaagaagggcagaccaaccatttattacgcaaaat
accaatccatattcactgtctttaccagaacctcttggtttgaaaaacactggtgttact
cctcaacaattcagggtatacgaagaatttggtaagaatattccaaacttggatgttatt
ccgtttgcaggattgcccgctcacgctccaccgatgactcaaaatgtgggtttaactcag
cctcagcaacaacaagcgcaaatgcctacccaaatcctaacctccgaacaaataagagct
caacaacaacagcagcaattacagaaaagccgtttgaatcagccatcccagtcggctcaa
cctccaggagtgaatgtcccaaatcctcaaggtgggattgctgcagttcaatcagatttg
gaacagaatcaacgtgttctcgttcacctcatggacattttagtttctcaaattaaagaa
aatgctacgaagaataacttagctgaattaggcgatcaaaaccaaattaaaaccatcatt
tttcaaattttgacattcattgcaaaaagcgcacaaaaggatcaattagctttaaaggta
tcccaagctgtcgttaatagcctttttgccactagtgagagtcctctctgcagagaagtt
ttgtccctacttttggaaaagttatgttctttatccctcgttgctagaaaagacgttgtc
tggtggttagtttatgccttggacagtaggaaattcaatgttcccgttatcagatccctt
ctagaagttaatttaattgatgctacagaattagataacgttttagttactgcaatgaaa
aataaaatggagaactcaactgaatttgctatgaaattaattcagaatactgtcttgtct
gatgatccaattttgatgagaatggacttcattaaaaccttagaacacttggcctcttcg
gaagatgaaaatgtaaagaaattcatcaaagagttcgaagatactaagataatgccagtg
aggaaaggtaccaaaaccacaagaacagaaaagctttacttagtatttacggaatgggta
aaattacttcaaagagttgagaataacgacgtaatcacaactgtttttatcaagcaatta
gtcgaaaagggtgttatcagcgatactgataatttacttacatttgtcaaaagttctctt
gagctatcagtttcttcattcaaagaaagtgacccgactgatgaggttttcatcgctatt
gatgctctaggatcgctaattataaaattgttgattttacagggtttcaaagatgataca
agaagagattacataaatgcaatattttctgtgatcgttttagtgtttgctaaggatcat
agccaagagggtaccacattcaatgaacgaccatatttcagactattttctaacatctta
tacgaatgggctaccatcaggacgcacaattttgttagaatatctgattccagcactagg
caggagctgatcgaatttgattctgtattttacaacactttctcaggatatttgcacgct
ctgcaaccatttgccttccctggattctcatttgcatgggtgacactattatcacacaga
atgttattaccaattatgctaagattacccaataaaataggttgggaaaagttaatgctt
ttgattatcgatttgtttaaatttttggaccaatacacaagtaaacatgcagtctctgac
gctgtttcggttgtttataagggaacactgcgtgttattttaggcatttcgaatgatatg
ccatcctttttgattgaaaatcactatgaattaatgaacaatctacctccaacatatttc
caactaaagaatgttattttatctgctattcctaagaatatgaccgttcccaacccatat
gacgtggatcttaatatggaggatattccagcatgtaaagaactacctgaagtcttcttt
gatcctgtaattgatttacactcattgaaaaagccagttgacaactacctacgtattccc
tcaaattcattattaagaacaatactaagcgctatttacaaggatacctatgacataaaa
aagggcgtaggctacgactttttatctgttgatagtaaattaattcgcgctattgtatta
catgtgggcattgaagctggaatagagtataagagaacttcttcaaatgcggtatttaat
acgaagtcttcttattatactttattgttcaatctgattcaaaatggtagcatcgaaatg
aaatatcaaattattctgtctattgtggaacaattgcggtatccaaacatccacacctat
tggttcagctttgtgttaatgaatatgttcaaaagtgacgaatggaatgatcaaaaactt
gaagtccaagaaattattttaagaaactttttaaaaagaattattgttaacaaaccacat
acctggggtgtttcagttttctttactcagttgataaacaataacgatattaatctttta
gacctgccctttgtacaaagtgttcccgaaattaaactaattttacaacaattagtaaaa
tattccaaaaaatacacaaccagtgaacaagatgaccaatccgccaccatcaatagaagg
caaacccctctacaatccaacgcataa
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