pI: 9.2999 |
Length (AA): 394 |
MW (Da): 46541 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 5 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
12 | 305 | 4au8 (A) | 1 | 288 | 39.00 | 0 | 1 | 1.23669 | -0.97 |
13 | 333 | 5efq (A) | 703 | 1025 | 39.00 | 0 | 1 | 1.32842 | -0.89 |
13 | 311 | 3blh (A) | 17 | 323 | 44.00 | 0 | 1 | 1.28238 | -0.8 |
13 | 233 | 2f2u (A) | 90 | 308 | 30.00 | 0 | 1 | 0.854614 | -0.19 |
15 | 391 | 5o2c (A) | 147 | 496 | 23.00 | 0 | 1 | 1.09355 | -0.04 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Mid 40-60% percentile | Trophozoite, Rahman HM-1 IMSS Trophozoite. | Hon CC |
Hon CC | Transcriptomics of virulent and avirulent strains |
Ortholog group members (OG5_130531)
Species | Accession | Gene Product |
---|---|---|
Brugia malayi | Bm1_20615 | cyclin-dependent kinase 9 |
Candida albicans | CaO19.11006 | CDC2-related protein kinase |
Candida albicans | CaO19.3524 | similar ot C terminus of S. cerevisiae SGV1 (YPR161C) |
Caenorhabditis elegans | CELE_M04D5.4 | Protein CDK-9, isoform A |
Caenorhabditis elegans | CELE_H25P06.2 | Protein CDK-9, isoform B |
Drosophila melanogaster | Dmel_CG5179 | Cyclin-dependent kinase 9 |
Echinococcus granulosus | EgrG_000627050 | cyclin dependent kinase 9 |
Echinococcus granulosus | EgrG_000596200 | cyclin dependent kinase 9 |
Entamoeba histolytica | EHI_108670 | protein kinase domain containing protein |
Echinococcus multilocularis | EmuJ_000596200 | cyclin dependent kinase 9 |
Echinococcus multilocularis | EmuJ_000627050 | cyclin dependent kinase 9 |
Homo sapiens | ENSG00000136807 | cyclin-dependent kinase 9 |
Loa Loa (eye worm) | LOAG_13620 | CMGC/CDK/CDK9 protein kinase |
Mus musculus | 107951 | cyclin-dependent kinase 9 (CDC2-related kinase) |
Saccharomyces cerevisiae | YPR161C | Sgv1p |
Schistosoma japonicum | Sjp_0217060 | ko:K02211 cyclin-dependent kinase 9, putative |
Schistosoma japonicum | Sjp_0025570 | ko:K02211 cyclin-dependent kinase 9, putative |
Schistosoma mansoni | Smp_094760 | serine/threonine protein kinase |
Schistosoma mansoni | Smp_003000 | kinase |
Schmidtea mediterranea | mk4.012948.00 | |
Schmidtea mediterranea | mk4.000003.28 | |
Schmidtea mediterranea | mk4.009317.00 |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
CELE_H25P06.2 | Caenorhabditis elegans | embryonic arrest | wormbase |
CELE_H25P06.2 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_H25P06.2 | Caenorhabditis elegans | larval arrest | wormbase |
CELE_H25P06.2 | Caenorhabditis elegans | slow growth | wormbase |
YPR161C | Saccharomyces cerevisiae | inviable | yeastgenome |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Homo sapiens | cyclin-dependent kinase 9 | Compounds | References |
Species | Target | Length | Identity | Alignment span | Linked Drugs | Reference |
---|---|---|---|---|---|---|
Patiria pectinifera | Cdc2 | 300 aa | 38.6% | 295 aa | Compounds | References |
Xenopus laevis | Aurora kinase B-A | 361 aa | 25.5% | 314 aa | Compounds | References |
Schizosaccharomyces pombe 972h- | Casein kinase II subunit alpha | 332 aa | 27.6% | 301 aa | Compounds | References |
Plasmodium falciparum (isolate 3D7) | Cell division control protein 2 homolog | 288 aa | 38.0% | 300 aa | Compounds | References |
Oryctolagus cuniculus | Cyclin-dependent kinase 4 | 189 aa | 39.9% | 173 aa | Compounds | References |
Rattus norvegicus | MAP kinase p38 alpha | 360 aa | 32.9% | 316 aa | Compounds | References |
Xenopus laevis | Aurora kinase B-B | 368 aa | 25.5% | 314 aa | Compounds | References |
Rattus norvegicus | Mitogen-activated protein kinase 1 | 358 aa | 32.5% | 298 aa | Compounds | References |
Rattus norvegicus | Cell division protein kinase 5 | 292 aa | 38.4% | 294 aa | Compounds | References |
Zea mays | Casein kinase II alpha | 332 aa | 28.1% | 303 aa | Compounds | References |
Homo sapiens | Cyclin-dependent kinase 1/cyclin B1 | 297 aa | 39.2% | 293 aa | Compounds | References |