Detailed view for GL50803_17084

Basic information

TDR Targets ID: 808675
Giardia lamblia, Kinase, NEK
Source Database / ID:  GiardiaDB  

pI: 6.0904 | Length (AA): 1462 | MW (Da): 161832 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00023   Ankyrin repeat
PF00069   Protein kinase domain
PF12796   Ankyrin repeats (3 copies)

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0005515   protein binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 17 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
8 394 3hzt (A) 74 461 17.00 0 1 0.402406 0.04
10 215 3com (A) 30 217 29.00 0.00011 1 0.279003 0.36
10 319 1u5q (A) 28 319 23.00 0 1 0.477738 -0.54
10 225 3a62 (A) 91 295 32.00 0.0000026 0.72 0.247843 0.66
126 216 4c57 (A) 149 257 33.00 0.16 0.17 0.179344 0.14
289 320 5wst (A) 863 894 22.00 0 0.03 0.785488 -5.77
423 670 2rfa (A) 47 265 29.00 0.27 1 0.109731 0.94
544 687 2rfm (A) 28 173 30.00 0.0031 1 0.446595 -0.24
548 664 1n0r (A) 2 121 36.00 0.000007 1 0.496127 -0.42
578 1416 4rlv (A) 2063 2796 26.00 0 1 0.541971 1.26
609 724 1ot8 (A) 75 203 32.00 0.2 1 0.382443 -0.19
674 1460 4rlv (A) 2030 2766 22.00 0 1 0.556004 1.14
971 1014 2xen (A) 46 92 57.00 0.022 1 0.551196 0.63
1101 1214 4ydw (A) 44 165 32.00 0.00012 1 0.482075 -0.8
1280 1460 5y4e (A) 1268 1436 30.00 0 1 0.370503 0.15
1323 1459 1awc (B) 10 141 23.00 0.000000022 1 0.344407 -0.19
1355 1459 2jab (A) 18 117 25.00 0.00000029 0.97 0.339519 -0.39

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_201019)

Species Accession Gene Product
Giardia lamblia GL50803_17084   Kinase, NEK

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus Cell division protein kinase 5 292 aa 23.4% 278 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0004 0.5 0.5
0.0023 0.5 0.5
0.0059 1 1
0.0091 1 0.5
0.0012 0.5 0.5
0.0008 0.5 0.5
0.0039 0.5 0.5
0.0032 0.5 0.5
0.0069 0.3067 0.5
0.0027 1 0.5
0.0064 0.3377 0.5
0.0011 1 0.5
0.0093 0.8828 0.5
0.0029 0.5 0.5
0.0022 0.5 0.5
0.0081 0.5 0.5
0.0056 1 0.5
0.0012 0.5 0.5
0.0036 0.5 0.5
0.0026 0.5 0.5
0.0033 0.5 0.5
0.0061 0.6883 1
0.0088 0.4477 0.5
0.0032 0.5 0.5
0.0063 0.7244 0
0.0092 1 0.5
0.0007 0.5 0.5
0.0059 1 1
0.0059 1 1
0.0067 0.5 0.5
0.0081 1 0.5
0.0007 0.5 0.5
0.0062 0.6935 0.5
0.0039 0.9485 0.5
0.0037 1 0.5
0.0063 1 0.5
0.0098 0.3242 0.2373
0.0012 0.5 0.5
0.0042 0.5 0.5
0.0016 0.5 0.5
0.0007 0.5 0.5
0.0018 0.5 0.5
0.0033 1 0.5
0.0066 0.3101 0.5
0.0016 0.5 0.5
0.0003 0.5 0.5
0.0039 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier GL50803_17084 (Giardia lamblia), Kinase, NEK
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