Detailed view for GL50803_14216

Basic information

TDR Targets ID: 811965
Giardia lamblia, Kinase, NEK
Source Database / ID:  GiardiaDB  

pI: 4.7021 | Length (AA): 774 | MW (Da): 85431 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain
PF12796   Ankyrin repeats (3 copies)

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0005515   protein binding  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 9 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 452 4ysj (A) 21 479 23.00 0 1 0.620387 0.29
4 264 3is5 (A) 130 395 31.00 0 1 0.605109 -0.88
326 635 2aja (A) 26 343 13.00 0 0.74 0.284217 0.77
374 774 4rlv (A) 2213 2634 25.00 0 1 0.662988 0.25
424 537 1ot8 (A) 117 236 31.00 0.0014 1 0.547287 -0.58
443 622 5aqa (A) 17 157 38.00 0.00000034 1 0.287558 0.67
486 540 3ehr (A) 105 162 42.00 0.036 1 0.575059 -0.52
553 636 5cbn (A) 18 105 37.00 0.00032 1 0.604527 -0.84
646 767 1awc (B) 13 135 20.00 0.000000019 1 0.333523 -0.46

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_159157)

Species Accession Gene Product
Giardia lamblia GL50803_14216   Kinase, NEK
Trichomonas vaginalis TVAG_361340   CAMK family protein kinase

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 25.2% 305 aa Compounds References
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 30.0% 307 aa Compounds References
Rattus norvegicus Mitogen-activated protein kinase 1 358 aa 28.2% 316 aa Compounds References
Sus scrofa Casein kinase I isoform alpha 125 aa 26.0% 123 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 36.9% 157 aa Compounds References
Plasmodium falciparum (isolate 3D7) Cell division control protein 2 homolog 288 aa 29.0% 300 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0098 0.3242 0.2373
0.0012 0.5 0.5
0.0016 0.5 0.5
0.0063 1 0.5
0.0056 1 0.5
0.0088 0.4477 0.5
0.0062 0.6935 0.5
0.0029 0.5 0.5
0.0093 0.8828 0.5
0.0018 0.5 0.5
0.0037 1 0.5
0.0023 0.5 0.5
0.0011 1 0.5
0.0007 0.5 0.5
0.0012 0.5 0.5
0.0059 1 1
0.0064 0.3377 0.5
0.0007 0.5 0.5
0.0033 0.5 0.5
0.0059 1 1
0.0032 0.5 0.5
0.0016 0.5 0.5
0.0027 1 0.5
0.0012 0.5 0.5
0.0069 0.3067 0.5
0.0032 0.5 0.5
0.0026 0.5 0.5
0.0091 1 0.5
0.0092 1 0.5
0.0007 0.5 0.5
0.0003 0.5 0.5
0.0061 0.6883 1
0.0039 0.5 0.5
0.0063 0.7244 0
0.0039 0.9485 0.5
0.0033 1 0.5
0.0022 0.5 0.5
0.0036 0.5 0.5
0.0008 0.5 0.5
0.0081 1 0.5
0.0066 0.3101 0.5
0.0004 0.5 0.5
0.0081 0.5 0.5
0.0059 1 1
0.0067 0.5 0.5
0.0042 0.5 0.5
0.0039 0.5 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier GL50803_14216 (Giardia lamblia), Kinase, NEK
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