Detailed view for TGME49_204325

Basic information

TDR Targets ID: 835135
Toxoplasma gondii, hypothetical protein
Source Database / ID:  ToxoDB 

pI: 8.354 | Length (AA): 106 | MW (Da): 11447 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 100 2k7n (A) 61 162 21.00 0.00000085 0.79 1.0311 0.9
5 73 1xo7 (A) 72 140 20.00 0 0.17 0.861243 -0.05
5 106 1zkc (A) 339 436 24.00 0 0.22 1.04556 1.26
29 99 2k7n (A) 95 161 31.00 0.011 0.5 0.743611 1.88

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile ME49 merozoite. Hehl AB
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile VEG Tachyzoite, ME49 Oocyst, ME49 Bradyzoite. Gregory Fritz HM Sibley/Greg
Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile ME49 Tachyzoite. Gregory
Show/Hide expression data references
  • Fritz HM Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.
  • Sibley/Greg ToxoDB
  • Hehl AB Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes.
  • Gregory ToxoDB

Orthologs

Ortholog group members (OG5_133785)

Species Accession Gene Product
Echinococcus granulosus EgrG_000477000   peptidyl prolyl cis trans isomerase 6
Echinococcus multilocularis EmuJ_000477000   peptidyl prolyl cis trans isomerase 6
Homo sapiens ENSG00000185250   peptidylprolyl isomerase (cyclophilin)-like 6
Leishmania braziliensis LbrM.01.0250   cyclophilin 12, putative
Leishmania donovani LdBPK_010220.1   cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
Leishmania infantum LinJ.01.0220   cyclophilin 12, putative
Leishmania major LmjF.01.0220   cyclophilin 12, putative
Leishmania mexicana LmxM.01.0220   cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
Mus musculus ENSMUSG00000078451   peptidylprolyl isomerase (cyclophilin)-like 6
Schistosoma japonicum Sjp_0070260   ko:K01802 peptidylprolyl isomerase [EC5.2.1.8], putative
Schistosoma mansoni Smp_054330   cyclophilin
Schmidtea mediterranea mk4.000351.04   Peptidyl-prolyl cis-trans isomerase-like 6
Trypanosoma brucei gambiense Tbg972.9.1740   cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
Trypanosoma brucei Tb927.9.3440   cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
Trypanosoma congolense TcIL3000_9_1010   cyclophilin type peptidyl-prolyl cis-trans isomerase, putative
Trypanosoma cruzi TcCLB.504797.100   rotamase, putative
Trypanosoma cruzi TcCLB.511577.40   35 kDa cyclophilin, putative
Toxoplasma gondii TGME49_204325   hypothetical protein

Essentiality

TGME49_204325 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb09.160.2070 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb09.160.2070 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb09.160.2070 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb09.160.2070 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TGME49_204325 (Toxoplasma gondii), hypothetical protein
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