Detailed view for TVAG_424350

Basic information

TDR Targets ID: 928629
Trichomonas vaginalis, zinc finger protein MYND domain-containing protein, putative
Source Database / ID: 

pI: 7.004 | Length (AA): 396 | MW (Da): 44953 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF01753   MYND finger

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

No model available for this protein in Modbase.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_132484)

Species Accession Gene Product
Echinococcus granulosus EgrG_000687100   Zinc finger MYND domain containing protein 12
Echinococcus multilocularis EmuJ_000687100   Zinc finger MYND domain containing protein 12
Homo sapiens ENSG00000066185   zinc finger, MYND-type containing 12
Leishmania braziliensis LbrM.34.4370   hypothetical protein, conserved
Leishmania donovani LdBPK_354460.1   TAX-1
Leishmania infantum LinJ.35.4460   hypothetical protein, conserved
Leishmania major LmjF.35.4390   hypothetical protein, conserved
Leishmania mexicana LmxM.34.4390   hypothetical protein, conserved
Mus musculus ENSMUSG00000070806   zinc finger, MYND domain containing 12
Neospora caninum NCLIV_056000   hypothetical protein
Schistosoma japonicum Sjp_0061940   Zinc finger MYND domain-containing protein 12, putative
Schistosoma mansoni Smp_102750   hypothetical protein
Schmidtea mediterranea mk4.001639.00  
Trypanosoma brucei gambiense Tbg972.9.6030   hypothetical protein, conserved
Trypanosoma brucei Tb927.9.10370   TAX-1
Trypanosoma congolense TcIL3000_9_3950   hypothetical protein, conserved
Trypanosoma congolense TcIL3000_9_3940   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.506147.200   hypothetical protein, conserved
Trypanosoma cruzi TcCLB.510733.40   hypothetical protein, conserved
Toxoplasma gondii TGME49_312445   hypothetical protein
Toxoplasma gondii TGME49_312460   zinc finger, MYND-type containing 12 family protein
Trichomonas vaginalis TVAG_424350   zinc finger protein MYND domain-containing protein, putative

Essentiality

TVAG_424350 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb09.211.1790 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb09.211.1790 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (6 days) alsford
Tb09.211.1790 Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb09.211.1790 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
TGME49_312460 Toxoplasma gondii Essentiality uncertain sidik
TGME49_312445 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier TVAG_424350 (Trichomonas vaginalis), zinc finger protein MYND domain-containing protein, putative
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