Detailed view for LOAG_12947

Basic information

TDR Targets ID: 948779
Loa Loa (eye worm), hypothetical protein
Source Database / ID:  KEGG  

pI: 9.4992 | Length (AA): 179 | MW (Da): 20701 | Paralog Number: 5

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF13927   Immunoglobulin domain

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
84 170 2iep (A) 122 209 31.00 0.12 0.98 0.859534 -0.67
87 171 1cs6 (A) 307 388 38.00 0.001 1 0.90336 -0.5
88 169 3laf (A) 298 379 29.00 0.19 0.67 0.794601 -0.71
100 170 5ope (A) 279 348 43.00 0.000026 1 0.898148 -0.63

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_133289)

Species Accession Gene Product
Brugia malayi Bm1_02990   protein unc-52
Caenorhabditis elegans CELE_ZC101.2   Protein UNC-52, isoform B
Drosophila melanogaster Dmel_CG33950   terribly reduced optic lobes
Homo sapiens ENSG00000142798   heparan sulfate proteoglycan 2
Loa Loa (eye worm) LOAG_12028   hypothetical protein
Loa Loa (eye worm) LOAG_12947   hypothetical protein
Loa Loa (eye worm) LOAG_13967   hypothetical protein
Loa Loa (eye worm) LOAG_04720   basement membrane proteoglycan
Loa Loa (eye worm) LOAG_10457   hypothetical protein
Loa Loa (eye worm) LOAG_15190   hypothetical protein
Mus musculus ENSMUSG00000028763   perlecan (heparan sulfate proteoglycan 2)
Onchocerca volvulus OVOC10067   Basement membrane proteoglycan homolog
Schistosoma japonicum Sjp_0074600   IPR013106,Immunoglobulin V-set;IPR003599,Immunoglobulin subtype;IPR007110,Immunoglobulin-like,domain-containing
Schmidtea mediterranea mk4.000951.01  
Schmidtea mediterranea mk4.001574.01  
Schmidtea mediterranea mk4.002891.04  
Schmidtea mediterranea mk4.002891.03  
Schmidtea mediterranea mk4.000757.01  

Essentiality

LOAG_12947 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_ZC101.2 Caenorhabditis elegans adult lethal wormbase
CELE_ZC101.2 Caenorhabditis elegans embryonic lethal wormbase
CELE_ZC101.2 Caenorhabditis elegans larval lethal wormbase
CELE_ZC101.2 Caenorhabditis elegans slow growth wormbase
CELE_ZC101.2 Caenorhabditis elegans sterile wormbase
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

No user comments are available for this gene. Log in to add comments, or register.

Enter your comment

User ()
Gene identifier LOAG_12947 (Loa Loa (eye worm)), hypothetical protein
Title for this comment
Comment