Detailed view for EmuJ_000619300

Basic information

TDR Targets ID: 958349
Echinococcus multilocularis, collagen alpha 1(VII) chain
Source Database / ID:  GeneDB

pI: 8.4188 | Length (AA): 5280 | MW (Da): 595435 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00092   von Willebrand factor type A domain

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Structural information

Modbase 3D models:

There are 7 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1822 2183 4a5w (B) 498 886 24.00 0.5 0.73 -0.0984394 2.34
3724 3898 4cn9 (A) 233 404 24.00 0.0072 0.62 0.262144 -0.23
3746 3887 3ibs (A) 7 142 30.00 0.074 0.98 0.440894 -0.72
3746 3926 1v7p (C) 145 334 23.00 0.82 1 0.36028 -1.32
4506 4774 3vuu (A) 164 448 23.00 0.69 0.33 0.147947 0.2
4658 4748 2n1k (A) 6 97 5.00 0.0047 0.01 0.103235 -1.02
4663 4741 3teu (A) 3 83 13.00 0.0036 0.01 0.175962 -1.07

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_206345)

Species Accession Gene Product
Echinococcus granulosus EgrG_000619300   collagen alpha 1VII chain
Echinococcus multilocularis EmuJ_000619300   collagen alpha 1(VII) chain
Schistosoma japonicum Sjp_0107310   expressed protein
Schistosoma japonicum Sjp_0119310   IPR003014,N/apple PAN;IPR003609,Apple-like,domain-containing
Schistosoma japonicum Sjp_0073890   hypothetical protein
Schistosoma japonicum Sjp_0073900   IPR013032,EGF-like region;IPR002919,Protease inhibitor I8, cysteine-rich trypsin inhibitor-like,domain-containing
Schistosoma japonicum Sjp_0088270   IPR002919,Protease inhibitor I8, cysteine-rich trypsin inhibitor-like,domain-containing
Schistosoma japonicum Sjp_0012330   hypothetical protein
Schistosoma japonicum Sjp_0084430   expressed protein
Schistosoma mansoni Smp_157690   hypothetical protein
Schmidtea mediterranea mk4.003138.03  
Schmidtea mediterranea mk4.000873.08  
Schmidtea mediterranea mk4.000873.04  

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EmuJ_000619300 (Echinococcus multilocularis), collagen alpha 1(VII) chain
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