Detailed view for EmuJ_001034200

Basic information

TDR Targets ID: 964497
Echinococcus multilocularis, high voltage activated calcium channel beta
Source Database / ID:  GeneDB

pI: 9.8924 | Length (AA): 806 | MW (Da): 86892 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00625   Guanylate kinase

Gene Ontology

Mouse over links to read term descriptions.
GO:0070588   GO:calcium ion transmembrane transport  

GO:0005891   voltage-gated calcium channel complex  
GO:0005515   protein binding  
GO:0005245   voltage-gated calcium channel activity  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2 50 2d46 (A) 16 61 33.00 0.00001 0.15 0.250594 0.83
20 444 1vyu (B) 32 362 55.00 0 1 0.586495 1.04
22 443 4dey (A) 35 411 58.00 0 1 0.585773 1.01
33 133 1vyv (A) 74 212 42.00 0.000000017 0.98 0.69411 -0.73
618 729 6ewy (A) 95 233 36.00 0.27 0.4 0.203158 0.89
666 728 5hmo (A) 810 873 32.00 0.56 0.07 0.449364 -0.61

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_246029)

Species Accession Gene Product
Echinococcus granulosus EgrG_001034200   high voltage activated calcium channel beta
Echinococcus multilocularis EmuJ_001034200   high voltage activated calcium channel beta
Schistosoma japonicum Sjp_0051180   Voltage-dependent L-type calcium channel subunit beta-2, putative
Schistosoma japonicum Sjp_0124490   expressed protein
Schistosoma mansoni Smp_135140   high voltage-activated calcium channel beta subunit 1
Schmidtea mediterranea mk4.000187.08   Putative high voltage-activated calcium channel beta subunit 1
Schmidtea mediterranea mk4.000187.09  
Schmidtea mediterranea mk4.026810.00   Ca2+-channel-protein-beta-subunit

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Schistosoma mansoni high voltage-activated calcium channel beta subunit 1 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0274 0.3085 0.3085
0.0297 0.371 0.371
0.0286 0.2724 0.2711
0.0298 0.3013 0.3013
0.0293 0.4244 0.6159
0.0287 0.2696 0.2692
0.0277 0.5636 0.5636
0.0311 0.3019 0.3019
0.028 0.3476 0.3476
0.027 0.2796 0.2786
0.0261 0.5332 0.5316
0.0261 0.564 0.5631
0.0324 0.3666 0.3666
0.0262 0.2779 0.2779
0.0324 0.3666 0.3666
0.0277 0.2802 0.2796
0.0284 0.4057 0.4044
0.0324 0.3666 0.3666
0.0324 0.3685 0.4091
0.0294 0.4176 0.4176
0.0269 0.362 0.3611
0.0551 0.4387 0.4384
0.0271 0.2701 0.2701
0.0261 0.2583 0.2583
0.0315 0.371 0.371
0.031 1 1
0.0284 0.4057 0.4044
0.0293 0.4244 0.6159
0.0602 0.3159 0.3151
0.0259 0.5312 0.5307
0.0541 0.4325 0.4321
0.0324 0.4764 0.9503
0.0267 0.275 0.275
0.0308 0.3746 0.371
0.0551 0.4388 0.4385
0.0531 0.4949 0.4945
0.0284 0.4057 0.4044
0.0558 0.2527 0.2527
0.0547 0.3288 0.3288
0.0298 0.4246 0.4246
0.0293 0.2826 0.2826
0.0263 0.3155 0.3153
0.0304 0.2976 0.2976
0.0324 0.3666 0.3666
0.0324 0.3453 0.3959
0.0523 0.4725 0.4721
0.0288 0.371 0.371
0.0278 0.2651 0.2651

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier EmuJ_001034200 (Echinococcus multilocularis), high voltage activated calcium channel beta
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