Tgon generic query set

Posted by Dany Shanmugam on 2011-03-25 19:50:47

This Query set was constructed based on the generic queries that were run for identifying targets from various pathogens (see PLOS NTD paper) with few modifications. The top 100 from this list will be used for prioritizing targets for the structural genomics consortia.

Queries in this set

Click on the links below to browse the contents of each query. You can also use the checkboxes to select queries you would like to import into your history.
Import ranked queries into your history to redo the scoring strategy

Select: All, None.

  Tgon any EC number (556 records). Show parameters.

  Tgon all proteins (9213 records). Show parameters.

  Tgon dindex >=0.6 (214 records). Show parameters.

  Tgon no TM domain (5938 records). Show parameters.

  Tgon PDB structure (20 records). Show parameters.

  Tgon modbase (1499 records). Show parameters.

  Tgon Mwt <100K (7201 records). Show parameters.

  Tgon any essentiality (1295 records). Show parameters.

  Tgon assayable (213 records). Show parameters.

  Tgon Pubmed (339 records). Show parameters.

  Tgon in all apicomplexa (12 species - 6 plasmodia, 4 cryptosporidia, 1 Neospora, 1 babesia) (888 records). Show parameters.

  Tgon not in human (6934 records). Show parameters.

  Tgon in Coccidia (5 species - 4 cryptosporiadia, 1 Neospora) (920 records). Show parameters.

  Weighted union of Tgon queries (9213 records). Show parameters.