Detailed information for compound 1523645

Basic information

Technical information
  • Name: Unnamed compound
  • MW: 382.456 | Formula: C21H26N4O3
  • H donors: 3 H acceptors: 4 LogP: 3.32 Rotable bonds: 12
    Rule of 5 violations (Lipinski): 1
  • SMILES: O/N=C(\C(=O)NC)/CCCCCCC(=O)Nc1cccc(c1)c1cccnc1
  • InChi: 1S/C21H26N4O3/c1-22-21(27)19(25-28)11-4-2-3-5-12-20(26)24-18-10-6-8-16(14-18)17-9-7-13-23-15-17/h6-10,13-15,28H,2-5,11-12H2,1H3,(H,22,27)(H,24,26)/b25-19-
  • InChiKey: XYVJPFPWTAOHKQ-PLRJNAJWSA-N  

Network

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Synonyms

No synonyms found for this compound

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens histone deacetylase 3 Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Neospora caninum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania donovani histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania braziliensis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma cruzi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania infantum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Toxoplasma gondii histone deacetylase HDAC2 Get druggable targets OG5_126742 All targets in OG5_126742
Entamoeba histolytica histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus multilocularis histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium vivax histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi histone deacetylase 1 (HD1) Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma cruzi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma japonicum ko:K06067 histone deacetylase 1/2, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania major histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Neospora caninum hypothetical protein Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma japonicum ko:K01463 Hdac3 [EC:3.5.1.-], putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi histone deacetylase 3 (HD3) Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium parvum RPD3/HD1 histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium parvum histone deacetylase HDA2/Rpd3p Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania braziliensis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania mexicana histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania major histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania infantum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi Histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium falciparum histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Toxoplasma gondii histone deacetylase HDAC3 Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium hominis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma mansoni histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus multilocularis histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma mansoni histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania mexicana histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Theileria parva histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus granulosus histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium knowlesi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium berghei histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania donovani histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium yoelii histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma brucei histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Babesia bovis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma brucei gambiense histone deacetylase 1,histone deacetylase-like 1 protein, putative Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium hominis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma congolense histone deacetylase-like 1 protein, putative Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Giardia lamblia Histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus granulosus histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Trypanosoma cruzi histone deacetylase, putative histone deacetylase 3 428 aa 374 aa 30.5 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Entamoeba histolytica hypothetical protein 0.0461 1 1
Loa Loa (eye worm) hypothetical protein 0.0132 0.1961 0.7602
Trypanosoma cruzi histone deacetylase 1, putative 0.0077 0.0604 0.5
Trypanosoma brucei histone deacetylase 1 0.0077 0.0604 0.5
Plasmodium falciparum histone deacetylase 1 0.0077 0.0604 0.5
Schistosoma mansoni transcription factor LCR-F1 0.0461 1 1
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Brugia malayi histone deacetylase 1 (HD1) 0.0077 0.0604 0.0184
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Leishmania major histone deacetylase, putative 0.0077 0.0604 0.5
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Brugia malayi histone deacetylase 3 (HD3) 0.0077 0.0604 0.0184
Loa Loa (eye worm) hypothetical protein 0.0132 0.1946 0.752
Schistosoma mansoni aryl hydrocarbon receptor 0.0202 0.3664 0.3381
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0077 0.0604 0.5
Entamoeba histolytica hypothetical protein 0.0461 1 1
Toxoplasma gondii histone deacetylase HDAC2 0.0077 0.0604 0.5
Leishmania major histone deacetylase, putative 0.0077 0.0604 0.5
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0077 0.0604 0.5
Echinococcus granulosus Basic leucine zipper bZIP transcription 0.0461 1 1
Echinococcus granulosus aryl hydrocarbon receptor 0.015 0.2404 0.1915
Schistosoma mansoni hypothetical protein 0.0461 1 1
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Onchocerca volvulus 0.015 0.2389 1
Brugia malayi Histone deacetylase 1 0.0077 0.0604 0.0184
Trypanosoma cruzi histone deacetylase 1, putative 0.0077 0.0604 0.5
Echinococcus multilocularis Basic leucine zipper (bZIP) transcription 0.0461 1 1
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0077 0.0604 0.5
Echinococcus multilocularis aryl hydrocarbon receptor 0.015 0.2404 0.1915
Schistosoma mansoni histone deacetylase 0.0077 0.0604 0.0184
Schistosoma mansoni histone deacetylase 0.0077 0.0604 0.0184
Loa Loa (eye worm) hypothetical protein 0.015 0.2389 1
Trichomonas vaginalis histone deacetylase, putative 0.0077 0.0604 0.5
Brugia malayi aryl hydrocarbon receptor AHR-1 0.0132 0.1946 0.1586
Giardia lamblia Histone deacetylase 0.0077 0.0604 0.5
Toxoplasma gondii histone deacetylase HDAC3 0.0077 0.0604 0.5
Plasmodium vivax histone deacetylase 1, putative 0.0077 0.0604 0.5
Entamoeba histolytica hypothetical protein 0.0461 1 1
Entamoeba histolytica hypothetical protein 0.0461 1 1

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 18.4 uM Inhibition of human HDAC3 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) = 32.1 uM Inhibition of human HDAC9 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) = 42.8 uM Inhibition of human HDAC7 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) = 76.7 uM Inhibition of human HDAC8 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC1 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC2 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC4 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC5 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC6 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC10 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297
IC50 (binding) > 100 uM Inhibition of human HDAC11 using ArgHisLysLys(Ac) fluorogenic peptide as a substrate by fluorimetric assay ChEMBL. 21417297

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.