Detailed information for compound 18470

Basic information

Technical information
  • TDR Targets ID: 18470
  • Name: Guanosine-5'-Diphosphate
  • MW: 443.201 | Formula: C10H15N5O11P2
  • H donors: 7 H acceptors: 11 LogP: -4.67 Rotable bonds: 6
    Rule of 5 violations (Lipinski): 3
  • SMILES: OC1C(COP(=O)(OP(=O)(O)O)O)OC(C1O)n1cnc2c1nc(N)nc2O
  • InChi: 1S/C10H15N5O11P2/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(25-9)1-24-28(22,23)26-27(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H2,19,20,21)(H3,11,13,14,18)
  • InChiKey: QGWNDRXFNXRZMB-UHFFFAOYSA-N  

Network

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Synonyms

  • [(2R,3S,4R,5R)-5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate
  • [5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate
  • [5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methyl phosphono hydrogen phosphate
  • [5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxy-2-tetrahydrofuranyl]methyl phosphono hydrogen phosphate
  • [5-(2-azanyl-6-oxo-3H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate
  • [5-(2-amino-6-keto-3H-purin-9-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methyl phosphono hydrogen phosphate
  • [5-(2-amino-6-oxo-3H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate
  • 146-91-8
  • GDP
  • guanosine-diphosphate

Targets

Known targets for this compound

No curated genes were found associated with this compound

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Brugia malayi Chymotrypsin-like protease CTRL-1 precursor 0.0147 0.7414 0.7414
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Onchocerca volvulus Dipeptidyl peptidase family member 1 homolog 0.0183 1 1
Brugia malayi Trypsin family protein 0.0147 0.7414 0.7414
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Brugia malayi prolyl oligopeptidase family protein 0.0071 0.193 0.193
Echinococcus multilocularis Peptidase S1 S6, chymotrypsin Hap 0.0147 0.7414 0.6978
Echinococcus granulosus Mastin 0.0147 0.7414 0.6978
Echinococcus granulosus dipeptidyl aminopeptidaseprotein 0.0183 1 1
Echinococcus multilocularis dipeptidyl aminopeptidaseprotein 0.0183 1 1
Onchocerca volvulus 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0142 0.7059 0.7059
Echinococcus multilocularis enteropeptidase 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Brugia malayi Trypsin-like protease protein 5 0.0147 0.7414 0.7414
Schistosoma mansoni hypothetical protein 0.0147 0.7414 0.6978
Brugia malayi Trypsin family protein 0.0147 0.7414 0.7414
Mycobacterium ulcerans hypothetical protein 0.0147 0.7414 1
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Echinococcus granulosus glycoprotein Antigen 5 0.0147 0.7414 0.6978
Schistosoma mansoni dipeptidyl-peptidase 9 (S09 family) 0.0071 0.193 0.0569
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Echinococcus multilocularis transmembrane protease serine 3 0.0147 0.7414 0.6978
Echinococcus granulosus Dipeptidyl peptidase 9 0.0071 0.193 0.0569
Echinococcus granulosus prolyl endopeptidase 0.0142 0.7059 0.6563
Onchocerca volvulus Prolyl endopeptidase homolog 0.0142 0.7059 0.6563
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Echinococcus multilocularis Mastin 0.0147 0.7414 0.6978
Leishmania major dipeptidyl-peptidase 8-like serine peptidase, putative,serine peptidase, Clan SC, Family S9B 0.0071 0.193 0.0764
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Trypanosoma brucei prolyl endopeptidase 0.0142 0.7059 1
Trypanosoma brucei Dipeptidyl-peptidase 8-like, putative 0.0071 0.193 0.0764
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Brugia malayi hypothetical protein 0.0147 0.7414 0.7414
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Echinococcus granulosus enteropeptidase 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Brugia malayi Trypsin family protein 0.0147 0.7414 0.7414
Brugia malayi prolyl oligopeptidase family protein 0.0142 0.7059 0.7059
Loa Loa (eye worm) prolyl oligopeptidase 0.0183 1 1
Onchocerca volvulus 0.0147 0.7414 0.6978
Echinococcus multilocularis subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Echinococcus granulosus Peptidase S1 S6 chymotrypsin Hap 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Schistosoma mansoni aminopeptidase PILS (M01 family) 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Mycobacterium tuberculosis Probable protease II PtrBa [first part] (oligopeptidase B) 0.0115 0.5128 1
Brugia malayi Trypsin family protein 0.0147 0.7414 0.7414
Schistosoma mansoni prolyl oligopeptidase (S09 family) 0.0142 0.7059 0.6563
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Trypanosoma brucei serine peptidase, Clan SC, Family S9B 0.0071 0.193 0.0764
Loa Loa (eye worm) trypsin family protein 0.0147 0.7414 0.7414
Echinococcus multilocularis glycoprotein Antigen 5 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Trypanosoma cruzi prolyl endopeptidase 0.0142 0.7059 1
Trypanosoma cruzi dipeptidyl-peptidase 8-like serine peptidase 0.0071 0.193 0.0764
Mycobacterium leprae PROBABLE PROTEASE II PTRBB (OLIGOPEPTIDASE B) 0.0065 0.1506 0.5
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Trypanosoma cruzi serine peptidase, Clan SC, Family S9B 0.0071 0.193 0.0764
Toxoplasma gondii prolyl endopeptidase 0.0142 0.7059 1
Echinococcus granulosus transmembrane protease serine 3 0.0147 0.7414 0.6978
Schistosoma mansoni hypothetical protein 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0053 0.0659 0.0659
Echinococcus multilocularis Dipeptidyl peptidase 9 0.0071 0.193 0.0569
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Loa Loa (eye worm) hypothetical protein 0.0147 0.7414 0.7414
Schistosoma mansoni subfamily S9B unassigned peptidase (S09 family) 0.0183 1 1
Echinococcus multilocularis prolyl endopeptidase 0.0142 0.7059 0.6563
Onchocerca volvulus 0.0147 0.7414 0.6978
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Onchocerca volvulus 0.0147 0.7414 0.6978
Onchocerca volvulus 0.0147 0.7414 0.6978
Leishmania major prolyl oligopeptidase, putative,serine peptidase clan SC, family S9A, putative 0.0142 0.7059 1
Schistosoma mansoni subfamily S1A unassigned peptidase (S01 family) 0.0147 0.7414 0.6978
Schistosoma mansoni prolyl oligopeptidase (S09 family) 0.0142 0.7059 0.6563
Schistosoma mansoni cercarial elastase (S01 family) 0.0147 0.7414 0.6978
Onchocerca volvulus 0.0147 0.7414 0.6978
Echinococcus granulosus subfamily S1A unassigned peptidase S01 family 0.0147 0.7414 0.6978

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 5 uM Compound was tested for the inhibition of Fucosyltransferase 4 alpha 1,3 at 8.5 microM GDP-fucose ChEMBL. No reference
IC50 (binding) = 67 uM Inhibitory activity against fucosyltransferase (FucT V) in the presence of fucosyl acceptor N-acetyllactosamine ChEMBL. 11459637

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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