Detailed information for compound 2128478

Basic information

Technical information
  • Name: Unnamed compound
  • MW: 453.238 | Formula: C24H31N5O4
  • H donors: 3 H acceptors: 4 LogP: 3.17 Rotable bonds: 8
    Rule of 5 violations (Lipinski): 0
  • SMILES: CCOc1ccc(cc1c1nc2c(CC)nn(c2c(=O)[nH]1)C)C1CCC(CC1)CC(=O)NO
  • InChi: InChI=1S/C24H31N5O4/c1-4-18-21-22(29(3)27-18)24(31)26-23(25-21)17-13-16(10-11-19(17)33-5-2)15-8-6-14(7-9-15)12-20(30)28-32/h10-11,13-15,32H,4-9,12H2,1-3H3,(H,28,30)(H,25,26,31)
  • InChiKey: NSKSQVVODLRDIX-UHFFFAOYSA-N  

Network

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Synonyms

No synonyms found for this compound

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Homo sapiens histone deacetylase 1 References

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus granulosus histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Giardia lamblia Histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma congolense histone deacetylase-like 1 protein, putative Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma brucei gambiense histone deacetylase 1,histone deacetylase-like 1 protein, putative Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium hominis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Babesia bovis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium yoelii histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma brucei histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) hypothetical protein Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania donovani histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium berghei histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium knowlesi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus granulosus histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Loa Loa (eye worm) histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Theileria parva histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma mansoni histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania mexicana histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus multilocularis histone deacetylase 3 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium hominis histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma mansoni histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Toxoplasma gondii histone deacetylase HDAC3 Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium falciparum histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania mexicana histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania major histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania infantum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi histone deacetylase 3 (HD3) Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi histone deacetylase 1 (HD1) Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium parvum RPD3/HD1 histone deacetylase Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania braziliensis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Cryptosporidium parvum histone deacetylase HDA2/Rpd3p Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma japonicum ko:K06067 histone deacetylase 1/2, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742
Neospora caninum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Schistosoma japonicum ko:K01463 Hdac3 [EC:3.5.1.-], putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania major histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Candida albicans one of two distinct genes with strong similarity to S. cerevisiae RPD3 (YNL330C) SIN3 histone deacetylase complex component Get druggable targets OG5_126742 All targets in OG5_126742
Echinococcus multilocularis histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Brugia malayi Histone deacetylase 1 Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma cruzi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Plasmodium vivax histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trypanosoma cruzi histone deacetylase 1, putative Get druggable targets OG5_126742 All targets in OG5_126742
Entamoeba histolytica histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania infantum histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Toxoplasma gondii histone deacetylase HDAC2 Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania braziliensis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Leishmania donovani histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative Get druggable targets OG5_126742 All targets in OG5_126742
Trichomonas vaginalis histone deacetylase, putative Get druggable targets OG5_126742 All targets in OG5_126742
Neospora caninum hypothetical protein Get druggable targets OG5_126742 All targets in OG5_126742

By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Schistosoma mansoni histone deacetylase 0.0091 1 1
Trichomonas vaginalis cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Trypanosoma brucei histone deacetylase 1 0.0091 1 1
Loa Loa (eye worm) hypothetical protein 0.0037 0.0441 0.0441
Trypanosoma brucei cAMP-specific phosphodiesterase 0.0074 0.6902 0.6759
Trichomonas vaginalis high-affinity cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1
Trichomonas vaginalis cone cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis cGMP-dependent 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis cGMP-inhibited 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis conserved hypothetical protein 0.0065 0.5326 0.3492
Echinococcus granulosus histone deacetylase 7 0.0071 0.6359 0.619
Echinococcus granulosus histone deacetylase 6 0.0071 0.6359 0.619
Echinococcus granulosus histone deacetylase 6 0.0071 0.6359 0.619
Echinococcus granulosus histone deacetylase 6 0.0078 0.7655 0.7547
Schistosoma mansoni histone deacetylase 0.0091 1 1
Trichomonas vaginalis high-affinity cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trypanosoma cruzi cAMP specific phosphodiesterase, putative 0.0074 0.6902 0.6759
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0091 1 1
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1
Loa Loa (eye worm) histone deacetylase 0.0071 0.6359 0.6359
Echinococcus multilocularis histone deacetylase 1 0.0091 1 1
Trichomonas vaginalis cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis rod cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis conserved hypothetical protein 0.0065 0.5326 0.3492
Trypanosoma cruzi histone deacetylase 1, putative 0.0091 1 1
Loa Loa (eye worm) histone deacetylase 1 0.0091 1 1
Trypanosoma cruzi histone deacetylase, putative 0.0071 0.6359 0.619
Trichomonas vaginalis cAMP-specific phosphodiesterase, putative 0.0074 0.6902 0.5686
Trypanosoma cruzi cAMP specific phosphodiesterase, putative 0.0074 0.6902 0.6759
Trypanosoma brucei histone deacetylase, putative 0.0071 0.6359 0.619
Echinococcus granulosus histone deacetylase 1 0.0091 1 1
Trypanosoma brucei histone deacetylase 3 0.0071 0.6359 0.619
Leishmania major histone deacetylase, putative 0.0091 1 1
Schistosoma mansoni camp/cgmp cyclic nucleotide phosphodiesterase 0.0074 0.6902 0.6759
Giardia lamblia Histone deacetylase 0.0091 1 0.5
Plasmodium vivax histone deacetylase 2, putative 0.0071 0.6359 0.619
Brugia malayi Histone deacetylase 1 0.0091 1 1
Plasmodium vivax histone deacetylase, putative 0.0071 0.6359 0.619
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0091 1 1
Trichomonas vaginalis cAMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Toxoplasma gondii histone deacetylase HDAC1 0.0071 0.6359 0.619
Trichomonas vaginalis cAMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trypanosoma brucei histone deacetylase 4 0.0071 0.6359 0.619
Plasmodium vivax histone deacetylase 1, putative 0.0091 1 1
Echinococcus multilocularis histone deacetylase 6 0.0071 0.6359 0.619
Trichomonas vaginalis cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Brugia malayi Histone deacetylase family protein 0.0071 0.6359 0.619
Schistosoma mansoni histone deacetylase hda2 0.0078 0.7655 0.7547
Onchocerca volvulus Histone deacetylase 10 homolog 0.0037 0.0441 0.5
Echinococcus multilocularis histone deacetylase 7 0.0071 0.6359 0.619
Brugia malayi histone deacetylase 1 (HD1) 0.0091 1 1
Echinococcus granulosus histone deacetylase 0.0071 0.6359 0.619
Toxoplasma gondii histone deacetylase HDAC2 0.0091 1 1
Trichomonas vaginalis histone deacetylase 1, 2 ,3, putative 0.0091 1 1
Trypanosoma cruzi cAMP specific phosphodiesterase, putative 0.0074 0.6902 0.6759
Trypanosoma cruzi histone deacetylase, putative 0.0071 0.6359 0.619
Trichomonas vaginalis calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Loa Loa (eye worm) hypothetical protein 0.0041 0.1296 0.1296
Loa Loa (eye worm) histone deacetylase 7A 0.0071 0.6359 0.6359
Trypanosoma brucei cAMP-specific phosphodiesterase 0.0074 0.6902 0.6759
Trichomonas vaginalis calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Toxoplasma gondii histone deacetylase HDAC3 0.0091 1 1
Trypanosoma cruzi histone deacetylase, putative 0.0071 0.6359 0.619
Trichomonas vaginalis cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1
Trichomonas vaginalis cAMP-specific phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis cGMP-dependent 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Entamoeba histolytica histone deacetylase, putative 0.0091 1 0.5
Echinococcus granulosus histone deacetylase 3 0.0091 1 1
Loa Loa (eye worm) histone deacetylase 3 0.0091 1 1
Trypanosoma cruzi histone deacetylase 1, putative 0.0091 1 1
Plasmodium falciparum histone deacetylase 1 0.0091 1 1
Trichomonas vaginalis rod cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Echinococcus multilocularis histone deacetylase 6 0.0078 0.7655 0.7547
Trichomonas vaginalis high-affinity cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Echinococcus granulosus dual 3'5' cyclic AMP and GMP phosphodiesterase 0.0074 0.6902 0.6759
Trichomonas vaginalis conserved hypothetical protein 0.0065 0.5326 0.3492
Trichomonas vaginalis high-affinity cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Leishmania major histone deacetylase, putative 0.0091 1 1
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1
Loa Loa (eye worm) histone deacetylase 11 0.0037 0.0441 0.0441
Echinococcus multilocularis dual 3',5' cyclic AMP and GMP phosphodiesterase 0.0074 0.6902 0.6759
Echinococcus multilocularis histone deacetylase 0.0071 0.6359 0.619
Trichomonas vaginalis cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Brugia malayi Histone deacetylase family protein 0.0071 0.6359 0.619
Trichomonas vaginalis cone cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1
Trichomonas vaginalis calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Schistosoma mansoni histone deacetylase 4 5 0.0071 0.6359 0.619
Echinococcus multilocularis histone deacetylase 3 0.0091 1 1
Trichomonas vaginalis conserved hypothetical protein 0.0074 0.6902 0.5686
Toxoplasma gondii hypothetical protein 0.0065 0.5326 0.511
Echinococcus multilocularis histone deacetylase 6 0.0071 0.6359 0.619
Schistosoma mansoni histone deacetylase 4 5 0.0071 0.6359 0.619
Trichomonas vaginalis cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Trichomonas vaginalis cAMP/cGMP cyclic nucleotide phosphodiesterase, putative 0.0074 0.6902 0.5686
Trypanosoma cruzi cAMP specific phosphodiesterase, putative 0.005 0.2818 0.2486
Trichomonas vaginalis rod cGMP-specific 3,5-cyclic phosphodiesterase, putative 0.0074 0.6902 0.5686
Loa Loa (eye worm) hypothetical protein 0.0091 1 1
Trichomonas vaginalis histone deacetylase, putative 0.0091 1 1

Activities

Activity type Activity value Assay description Source Reference
IC50 (ADMET) = 6910 nM Inhibition of full length recombinant human C-terminal His/Flag-tagged HDAC1 expressed in baculovirus infected Sf9 cells using fluorogenic HDAC substrate after 30 mins by fluorescence analysis LITERATURE. 27606546
IC50 (ADMET) > 20000 nM Inhibition of full length recombinant human C-terminal His-tagged HDAC2 expressed in baculovirus infected Sf9 cells using fluorogenic HDAC substrate after 30 mins by fluorescence analysis LITERATURE. 27606546

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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