Detailed information for compound 262304

Basic information

Technical information
  • TDR Targets ID: 262304
  • Name: 1-phenylbenzimidazole-5-carbaldehyde
  • MW: 222.242 | Formula: C14H10N2O
  • H donors: 0 H acceptors: 2 LogP: 2.56 Rotable bonds: 2
    Rule of 5 violations (Lipinski): 1
  • SMILES: O=Cc1ccc2c(c1)ncn2c1ccccc1
  • InChi: 1S/C14H10N2O/c17-9-11-6-7-14-13(8-11)15-10-16(14)12-4-2-1-3-5-12/h1-10H
  • InChiKey: CVLRLLPCDQDBIQ-UHFFFAOYSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • 1-phenyl-5-benzimidazolecarboxaldehyde
  • 1-Phenylbenzimidazole deriv. 73

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Mus musculus platelet derived growth factor receptor, beta polypeptide Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
No druggable targets predicted by sequence similarity

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Echinococcus granulosus RNA directed DNA polymerase reverse transcriptase 0.0061 0.0158 0.0606
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Mycobacterium tuberculosis Possible maturase 0.0061 0.0158 0.5
Echinococcus multilocularis telomerase reverse transcriptase subunit 0.0061 0.0158 0.0606
Wolbachia endosymbiont of Brugia malayi ribonuclease HI 0.0718 0.2616 0.5
Brugia malayi reverse transcriptase 0.0061 0.0158 0.0589
Brugia malayi hypothetical protein 0.0061 0.0158 0.0589
Echinococcus multilocularis ribonuclease H1 0.0718 0.2616 1
Onchocerca volvulus Ribonuclease H1 homolog 0.0718 0.2616 1
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Echinococcus granulosus ribonuclease H1 0.0718 0.2616 1
Trypanosoma brucei hypothetical protein, conserved 0.0779 0.2844 0.2728
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Giardia lamblia Ribonuclease H 0.0718 0.2616 1
Trypanosoma brucei ingi protein (ORF1) 0.0779 0.2844 0.2728
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Brugia malayi reverse transcriptase 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Trypanosoma brucei ribonuclease H1 0.0718 0.2616 0.2497
Schistosoma mansoni protein kinase 0.0061 0.0158 0.0158
Brugia malayi hypothetical protein 0.0061 0.0158 0.0589
Trypanosoma brucei unspecified product 0.0779 0.2844 0.2728
Schistosoma mansoni scy1(yeast) protein kinase-like 0.0061 0.0158 0.0158
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Echinococcus multilocularis RNA directed DNA polymerase 0.0061 0.0158 0.0606
Echinococcus granulosus RNA directed DNA polymerase reverse transcriptase 0.0061 0.0158 0.0606
Toxoplasma gondii ribonuclease HI protein 0.0718 0.2616 0.5
Trypanosoma brucei ingi protein (ORF1) 0.0779 0.2844 0.2728
Schistosoma mansoni hypothetical protein 0.0061 0.0158 0.0158
Leishmania major ribonuclease H1, putative 0.0718 0.2616 0.5
Trypanosoma brucei retrotransposon hot spot protein 4 (RHS4), interrupted 0.0779 0.2844 0.2728
Brugia malayi reverse transcriptase 0.0061 0.0158 0.0589
Echinococcus granulosus KRAB A domain containing protein 0.0061 0.0158 0.0606
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Treponema pallidum ribonuclease H (rnhA) 0.0718 0.2616 0.5
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Brugia malayi hypothetical protein 0.0061 0.0158 0.0589
Schistosoma mansoni phosphoglucomutase 0.0718 0.2616 0.2616
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Trichomonas vaginalis ribonuclease H1, putative 0.0718 0.2616 1
Schistosoma mansoni hypothetical protein 0.0061 0.0158 0.0158
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Trypanosoma brucei RNA helicase, putative 0.2693 1 1
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Trypanosoma cruzi ribonuclease H1, putative 0.0718 0.2616 1
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Schistosoma mansoni serine/threonine protein kinase 0.0061 0.0158 0.0158
Echinococcus granulosus RNA directed DNA polymerase reverse transcriptase 0.0061 0.0158 0.0606
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi RNase H family protein 0.0718 0.2616 1
Loa Loa (eye worm) TK/KIN16 protein kinase 0.002 0.0005 1
Echinococcus granulosus RNA directed DNA polymerase reverse transcriptase 0.0061 0.0158 0.0606
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi RNase H family protein 0.0718 0.2616 1
Brugia malayi Zinc knuckle family protein 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi hypothetical protein 0.0061 0.0158 0.0589
Schistosoma mansoni phosphoglucomutase 0.0718 0.2616 0.2616
Schistosoma mansoni phosphoglucomutase 0.0718 0.2616 0.2616
Echinococcus multilocularis RNA directed DNA polymerase (reverse transcriptase) 0.0061 0.0158 0.0606
Trypanosoma cruzi ribonuclease H1, putative 0.0718 0.2616 1
Brugia malayi Zinc knuckle family protein 0.0061 0.0158 0.0589
Brugia malayi Pao retrotransposon peptidase family protein 0.0061 0.0158 0.0589
Brugia malayi RNase H family protein 0.0718 0.2616 1
Echinococcus granulosus RNA directed DNA polymerase 0.0061 0.0158 0.0606

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 8.4 uM Inhibition of phosphorylation of a random glutamate/tyrosine copolymer in lysates of transfected Sf9 insect cells overexpressing mouse platelet-derived growth factor receptor beta ChEMBL. 9876115
IC50 (binding) = 8.4 uM Inhibition of phosphorylation of a random glutamate/tyrosine copolymer in lysates of transfected Sf9 insect cells overexpressing mouse platelet-derived growth factor receptor beta ChEMBL. 9876115
IC50 (binding) > 50 uM Inhibition of phosphorylation of a random glutamate/tyrosine copolymer in lysates of transfected Sf9 insect cells overexpressing human fibroblast growth factor receptor 1 ChEMBL. 9876115
IC50 (binding) > 50 uM Inhibition of phosphorylation of a random glutamate/tyrosine copolymer in lysates of transfected Sf9 insect cells overexpressing human fibroblast growth factor receptor 1 ChEMBL. 9876115

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

If you have references for this compound, please enter them in a user comment (below) or Contact us.