Detailed information for compound 33923

Basic information

Technical information
  • TDR Targets ID: 33923
  • Name: 6-chloro-1,4-dihydropyrido[2,3-b]pyrazine-2,3 -dione
  • MW: 197.579 | Formula: C7H4ClN3O2
  • H donors: 2 H acceptors: 5 LogP: 1.39 Rotable bonds: 0
    Rule of 5 violations (Lipinski): 1
  • SMILES: Clc1ccc2c(n1)nc(c(n2)O)O
  • InChi: 1S/C7H4ClN3O2/c8-4-2-1-3-5(10-4)11-7(13)6(12)9-3/h1-2H,(H,9,12)(H,10,11,13)
  • InChiKey: QPRGYGULZXMPFU-UHFFFAOYSA-N  

Network

Hover on a compound node to display the structore

Synonyms

  • 6-chloro-1,4-dihydropyrido[2,3-b]pyrazine-2,3-quinone
  • 6-chloro-1,4-dihydropyrido[3,2-e]pyrazine-2,3-dione
  • 6-chloro-1,4-dihydropyrido[3,2-e]pyrazine-2,3-quinone

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Rattus norvegicus Glutamate (NMDA) receptor subunit zeta 1 Starlite/ChEMBL No references

Predicted pathogen targets for this compound

By orthology
Species Potential target Known druggable target/s Ortholog Group
Schistosoma mansoni glutamate receptor NMDA Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus multilocularis glutamate receptor NMDA Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus granulosus glutamate receptor NMDA Get druggable targets OG5_133478 All targets in OG5_133478
Schistosoma japonicum Glutamate [NMDA] receptor subunit zeta-1 precursor, putative Get druggable targets OG5_133478 All targets in OG5_133478
Schistosoma japonicum Glutamate [NMDA] receptor subunit zeta-1 precursor, putative Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus multilocularis nmda type glutamate receptor Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus granulosus nmda type glutamate receptor Get druggable targets OG5_133478 All targets in OG5_133478
Schistosoma japonicum Glutamate [NMDA] receptor subunit zeta-1 precursor, putative Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus multilocularis nmda type glutamate receptor Get druggable targets OG5_133478 All targets in OG5_133478
Schistosoma japonicum expressed protein Get druggable targets OG5_133478 All targets in OG5_133478
Echinococcus granulosus nmda type glutamate receptor Get druggable targets OG5_133478 All targets in OG5_133478

By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Drosophila melanogaster Glutamate receptor IA Glutamate (NMDA) receptor subunit zeta 1   938 aa 979 aa 23.7 %
Drosophila melanogaster NMDA receptor 2 Glutamate (NMDA) receptor subunit zeta 1   938 aa 878 aa 27.4 %
Echinococcus multilocularis glutamate (NMDA) receptor subunit Glutamate (NMDA) receptor subunit zeta 1   938 aa 822 aa 23.2 %

Obtained from network model

Ranking Plot


Putative Targets List


Species Potential target Raw Global Species
Echinococcus multilocularis glutamate receptor NMDA 0.0095 0.6645 0.6645
Echinococcus multilocularis nmda type glutamate receptor 0.0127 1 1
Brugia malayi Sodium:neurotransmitter symporter family protein 0.0096 0.6673 0.5
Schistosoma mansoni glutamate receptor NMDA 0.0109 0.8069 1
Echinococcus granulosus sodium and chloride dependent glycine 0.0096 0.6673 0.0085
Echinococcus multilocularis sodium and chloride dependent glycine 0.0096 0.6673 0.6673
Loa Loa (eye worm) Sodium:neurotransmitter symporter family protein 0.0096 0.6673 0.5
Loa Loa (eye worm) hypothetical protein 0.0096 0.6673 0.5
Echinococcus multilocularis nmda type glutamate receptor 0.01 0.7127 0.7127
Echinococcus granulosus sodium and chloride dependent glycine 0.0096 0.6673 0.0085
Echinococcus granulosus nmda type glutamate receptor 0.01 0.7127 0.1439
Echinococcus multilocularis sodium and chloride dependent glycine 0.0096 0.6673 0.6673
Loa Loa (eye worm) hypothetical protein 0.0096 0.6673 0.5

Activities

Activity type Activity value Assay description Source Reference
IC50 (binding) = 20.3 uM Inhibition of DAAO in porcine kidney homogenate using D-alanine as substrate assessed as pyruvate production incubated for 5 mins by microplate reader analysis ChEMBL. 27089209
Inhibition (binding) = 29 % Inhibition [3H]-AMPA binding to ionotropic glutamate receptor AMPA in rat whole brain membranes in the presence of 100 microM KSCN ChEMBL. 8632440
Inhibition (binding) = 29 % Inhibition [3H]-AMPA binding to ionotropic glutamate receptor AMPA in rat whole brain membranes in the presence of 100 microM KSCN ChEMBL. 8632440
Ki (binding) = -5.21 In vitro binding affinity for glycine site on the NMDA receptor. ChEMBL. No reference
Log Ki (binding) = 5.21 In vitro binding affinity for glycine site on the NMDA receptor. ChEMBL. No reference

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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