Detailed information for compound 342874

Basic information

Technical information
  • TDR Targets ID: 342874
  • Name: 5-bromo-N-[[2-[2-[(2R)-2-methylpyrrolidin-1-y l]ethyl]-1-benzofuran-5-yl]methyl]pyrimidin-2 -amine
  • MW: 415.327 | Formula: C20H23BrN4O
  • H donors: 1 H acceptors: 2 LogP: 4.36 Rotable bonds: 6
    Rule of 5 violations (Lipinski): 1
  • SMILES: Brc1cnc(nc1)NCc1ccc2c(c1)cc(o2)CCN1CCC[C@H]1C
  • InChi: 1S/C20H23BrN4O/c1-14-3-2-7-25(14)8-6-18-10-16-9-15(4-5-19(16)26-18)11-22-20-23-12-17(21)13-24-20/h4-5,9-10,12-14H,2-3,6-8,11H2,1H3,(H,22,23,24)/t14-/m1/s1
  • InChiKey: QAQUPWNQCHYROD-CQSZACIVSA-N  


Substructure search Similarity search

Network

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Synonyms

  • 5-bromo-N-[[2-[2-[(2R)-2-methylpyrrolidin-1-yl]ethyl]benzofuran-5-yl]methyl]pyrimidin-2-amine
  • 5-bromo-N-[[2-[2-[(2R)-2-methyl-1-pyrrolidinyl]ethyl]-5-benzofuranyl]methyl]-2-pyrimidinamine
  • (5-bromopyrimidin-2-yl)-[[2-[2-[(2R)-2-methylpyrrolidino]ethyl]benzofuran-5-yl]methyl]amine
  • (5-bromopyrimidin-2-yl)-[[2-[2-[(2R)-2-methylpyrrolidin-1-yl]ethyl]benzofuran-5-yl]methyl]amine

Targets

Known targets for this compound

Species Target name Source Bibliographic reference
Rattus norvegicus Histamine H3 receptor Starlite/ChEMBL References
Homo sapiens histamine receptor H3 Starlite/ChEMBL References

Predicted pathogen targets for this compound

By orthology
No druggable targets predicted by orthology data
By sequence similarity to non orthologous known druggable targets
Species Potential target Known druggable target Length Alignment span Identity
Loa Loa (eye worm) hypothetical protein Histamine H3 receptor   445 aa 384 aa 22.4 %
Echinococcus granulosus biogenic amine 5HT receptor Histamine H3 receptor   445 aa 405 aa 25.2 %
Obtained from network model

Ranking Plot

Putative Targets List

Species Potential target Raw Global Species
Toxoplasma gondii 3'5'-cyclic nucleotide phosphodiesterase domain-containing protein 0.0037 0 0.5
Loa Loa (eye worm) hypothetical protein 0.004 1 1
Trypanosoma brucei Voltage-dependent calcium channel subunit, putative 0.0037 0 0.5
Schistosoma mansoni transient receptor potential channel 0.0037 0.0001 0.0001
Echinococcus multilocularis transient receptor potential cation channel 0.0037 0.0001 0.0001
Toxoplasma gondii 3'5'-cyclic nucleotide phosphodiesterase domain-containing protein 0.0037 0 0.5
Loa Loa (eye worm) hypothetical protein 0.0037 0.0001 0.0001
Onchocerca volvulus Transient receptor potential cation channel trpm homolog 0.0037 0 0.5
Leishmania major hypothetical protein, unknown function 0.0037 0 0.5
Toxoplasma gondii hypothetical protein 0.0037 0 0.5
Toxoplasma gondii transporter, cation channel family protein 0.0037 0 0.5
Trichomonas vaginalis voltage and ligand gated potassium channel, putative 0.0037 0 0.5
Toxoplasma gondii transporter, cation channel family protein 0.0037 0 0.5
Echinococcus multilocularis transient receptor potential cation channel 0.004 1 1
Trypanosoma brucei inositol 1,4,5-trisphosphate receptor 0.0037 0 0.5
Trichomonas vaginalis voltage and ligand gated potassium channel, putative 0.0037 0 0.5
Trypanosoma cruzi Voltage-dependent calcium channel subunit, putative 0.0037 0 0.5
Schistosoma mansoni transient receptor potential channel 0.0037 0.0001 0.0001
Echinococcus granulosus short transient receptor potential channel 6 0.004 0.9999 0.9999
Leishmania major hypothetical protein, conserved 0.0037 0 0.5
Toxoplasma gondii transporter, cation channel family protein 0.0037 0 0.5
Leishmania major calcium channel protein, putative,ion transporter, putative 0.0037 0 0.5
Echinococcus multilocularis short transient receptor potential channel 6 0.004 0.9999 0.9999
Trypanosoma cruzi inositol 1,4,5-trisphosphate receptor, putative 0.0037 0 0.5
Echinococcus multilocularis transient receptor potential cation channel 0.004 1 1
Schistosoma mansoni transient receptor potential channel 0.004 0.9999 1
Echinococcus granulosus transient receptor potential cation channel 0.0037 0.0001 0.0001
Echinococcus granulosus transient receptor potential cation channel 0.004 1 1
Loa Loa (eye worm) hypothetical protein 0.0037 0.0001 0.0001
Echinococcus granulosus transient receptor potential cation channel 0.0037 0.0001 0.0001
Onchocerca volvulus 0.0037 0 0.5
Toxoplasma gondii hypothetical protein 0.0037 0 0.5
Onchocerca volvulus Transient receptor potential cation channel trpm homolog 0.0037 0 0.5

Activities

Activity type Activity value Assay description Source Reference
Ki (binding) = 1.22 nM In vitro binding affinity for human histamine H3 receptor using [3H]-N-alpha-methylhistamine ChEMBL. 16190774
Ki (binding) = 1.22 nM In vitro binding affinity for human histamine H3 receptor using [3H]-N-alpha-methylhistamine ChEMBL. 16190774
Ki (binding) = 4.02 nM In vitro binding affinity for rat histamine H3 receptor using [3H]-N-alpha-methylhistamine ChEMBL. 16190774
Ki (binding) = 4.02 nM In vitro binding affinity for rat histamine H3 receptor using [3H]-N-alpha-methylhistamine ChEMBL. 16190774

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
 
In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

Bibliographic References

1 literature reference was collected for this gene.

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