TDR Targets

Basic information

Technical information

TDR Targets ID: 75075
Name: 2-methyl-1-nitro-4-[(4,6,6-trimethyl-2-methyl idenecyclohex-3-en-1-yl)methyl]benzene
MW: 285.381 | Formula: C18H23NO2
H donors: 0 H acceptors: 2 LogP: 4.83 Rotable bonds: 3
Rule of 5 violations (Lipinski): 1
SMILES: CC1=CC(=C)C(C(C1)(C)C)Cc1ccc(c(c1)C)[N+](=O)[O-]
InChi: 1S/C18H23NO2/c1-12-8-13(2)16(18(4,5)11-12)10-15-6-7-17(19(20)21)14(3)9-15/h6-9,16H,2,10-11H2,1,3-5H3
InChiKey: ARDKBOYBRBHJCL-UHFFFAOYSA-N

Network

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Target Layer

Model Organisms

Species	Viewmode
Arabidopsis thaliana
Caenorhabditis elegans
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Oryza sativa
Saccharomyces cerevisiae
Schmidtea mediterranea
Other organisms

TDR Pathogens:

Species	Viewmode
Brugia malayi
Chlamydia trachomatis
Echinococcus granulosus
Entamoeba histolytica
Echinococcus multilocularis
Giardia lamblia
Leishmania major
Loa Loa (eye worm)
Mycobacterium leprae
Mycobacterium tuberculosis
Mycobacterium ulcerans
Onchocerca volvulus
Plasmodium falciparum
Plasmodium vivax
Schistosoma mansoni
Trypanosoma brucei
Trypanosoma cruzi
Toxoplasma gondii
Treponema pallidum
Trichomonas vaginalis
Wolbachia endosymbiont of Brugia malayi

Other Pathogens:

Species	Viewmode
Babesia bovis
Candida albicans
Cryptosporidium hominis
Cryptosporidium parvum
Leishmania braziliensis
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Neospora caninum
Plasmodium berghei
Plasmodium knowlesi
Plasmodium yoelii
Schistosoma japonicum
Trypanosoma brucei gambiense
Trypanosoma congolense
Theileria parva

Compound Layer

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Clustering layers

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Synonyms

2-methyl-1-nitro-4-[(4,6,6-trimethyl-2-methylene-cyclohex-3-en-1-yl)methyl]benzene
2-methyl-1-nitro-4-[(4,6,6-trimethyl-2-methylene-1-cyclohex-3-enyl)methyl]benzene
2-methyl-1-nitro-4-[(4,6,6-trimethyl-2-methylidene-cyclohex-3-en-1-yl)methyl]benzene
2-methyl-1-nitro-4-[(4,6,6-trimethyl-2-methylidene-1-cyclohex-3-enyl)methyl]benzene

Targets

Known targets for this compound

Species	Target name	Source	Bibliographic reference
Homo sapiens	progesterone receptor	Starlite/ChEMBL	References
Homo sapiens	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	Starlite/ChEMBL	References
Homo sapiens	androgen receptor	Starlite/ChEMBL	References

Predicted pathogen targets for this compound

By orthology

No druggable targets predicted by orthology data

By sequence similarity to non orthologous known druggable targets

No druggable targets predicted by sequence similarity

Ranking Plot

Putative Targets List

Species	Potential target	Raw	Global	Species
Loa Loa (eye worm)	steroid hormone receptor	0.0027	0.5	0.5
Schistosoma mansoni	thyroid hormone receptor	0.0027	0.5	0.5
Schistosoma mansoni	RAR-like nuclear receptor	0.0027	0.5	0.5
Echinococcus granulosus	COUP TF:Svp nuclear hormone receptor	0.0027	0.5	0.5
Schistosoma mansoni	coup transcription factor	0.0027	0.5	0.5
Brugia malayi	photoreceptor-specific nuclear receptor	0.0027	0.5	0.5
Echinococcus granulosus	FTZ F1 nuclear receptor protein	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-25	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-31	0.0027	0.5	0.5
Schistosoma mansoni	retinoid-x-receptor (RXR)	0.0027	0.5	0.5
Schistosoma mansoni	steroid hormone receptor ad4bp	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-49	0.0027	0.5	0.5
Echinococcus multilocularis	hepatocyte nuclear factor 4 alpha	0.0027	0.5	0.5
Echinococcus multilocularis	Nuclear hormone receptor family member nhr 41	0.0027	0.5	0.5
Onchocerca volvulus		0.0027	0.5	0.5
Echinococcus granulosus	hepatocyte nuclear factor 4 alpha	0.0027	0.5	0.5
Onchocerca volvulus	Bile acid receptor homolog	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-3	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Schistosoma mansoni	retinoic acid receptor RXR	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-31	0.0027	0.5	0.5
Echinococcus multilocularis	COUP TF:Svp nuclear hormone receptor	0.0027	0.5	0.5
Schistosoma mansoni	thyroid hormone receptor	0.0027	0.5	0.5
Onchocerca volvulus	Protein ultraspiracle homolog	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-25	0.0027	0.5	0.5
Echinococcus multilocularis	FTZ F1 nuclear receptor protein	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-1	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-41	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Echinococcus granulosus	retinoic acid receptor rxr beta a	0.0027	0.5	0.5
Schistosoma mansoni	nuclear hormone receptor	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Brugia malayi	Steroid receptor seven-up type 2	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-14	0.0027	0.5	0.5
Schistosoma mansoni	FTZ-F1 nuclear receptor-like protein	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-19	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Schistosoma mansoni	photoreceptor-specific nuclear receptor related	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor-like 1	0.0027	0.5	0.5
Echinococcus granulosus	nuclear receptor 2DBD gamma	0.0027	0.5	0.5
Onchocerca volvulus	Steroid hormone receptor family member cnr14 homolog	0.0027	0.5	0.5
Echinococcus multilocularis	ecdysone induced protein 78C	0.0027	0.5	0.5
Echinococcus granulosus	Nuclear hormone receptor family member nhr 41	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-14	0.0027	0.5	0.5
Echinococcus granulosus	FTZ F1 alpha	0.0027	0.5	0.5
Echinococcus multilocularis	thyroid hormone receptor alpha	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Brugia malayi	nuclear receptor NHR-88	0.0027	0.5	0.5
Echinococcus multilocularis	nuclear receptor 2DBD gamma	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-19	0.0027	0.5	0.5
Schistosoma mansoni	nuclear hormone receptor nor-1/nor-2	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-40	0.0027	0.5	0.5
Echinococcus granulosus	nuclear receptor 2DBD gamma	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-41	0.0027	0.5	0.5
Echinococcus multilocularis	FTZ F1 alpha	0.0027	0.5	0.5
Brugia malayi	Ligand-binding domain of nuclear hormone receptor family protein	0.0027	0.5	0.5
Brugia malayi	nuclear hormone receptor	0.0027	0.5	0.5
Brugia malayi	steroid hormone receptor	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-1	0.0027	0.5	0.5
Brugia malayi	Nuclear hormone receptor family member nhr-40	0.0027	0.5	0.5
Echinococcus granulosus	ecdysone induced protein 78C	0.0027	0.5	0.5
Echinococcus multilocularis	nuclear receptor 2DBD gamma	0.0027	0.5	0.5
Schistosoma mansoni	Tr4/Tr2 (homologue)	0.0027	0.5	0.5
Loa Loa (eye worm)	hypothetical protein	0.0027	0.5	0.5
Schistosoma mansoni	nuclear receptor 2DBD-gamma	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear Hormone Receptor family member	0.0027	0.5	0.5
Brugia malayi	Ligand-binding domain of nuclear hormone receptor family protein	0.0027	0.5	0.5
Loa Loa (eye worm)	nuclear hormone receptor family member nhr-49	0.0027	0.5	0.5

Activities

Activity type	Activity value	Assay description	Source	Reference
Efficacy (functional)	< 20 %	Agonistic efficacy relative to progesterone (100%) on Human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601
Efficacy (functional)	< 20 %	Agonistic efficacy relative to progesterone (100%) on Human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601
IC50 (functional)	= 510 nM	Antagonistic potency to the human progesterone receptor measured in the T-47D alkaline phospatase assay	ChEMBL.	8627601
IC50 (functional)	= 510 nM	Antagonistic potency to the human progesterone receptor measured in the T-47D alkaline phospatase assay	ChEMBL.	8627601
IC50 (binding)	= 1800 nM	Concentration required to give half-maximal inhibition against human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601
IC50 (binding)	= 1800 nM	Concentration required to give half-maximal inhibition against human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601
Ki (binding)	nM	Binding affinity determined for human estrogen receptor; ND = Not determined	ChEMBL.	8627601
Ki (binding)	0 nM	Binding affinity determined for human estrogen receptor; ND = Not determined	ChEMBL.	8627601
Ki (binding)	= 28.8 nM	Binding affinity determined for human Progesterone receptor A isoform	ChEMBL.	8627601
Ki (binding)	= 28.8 nM	Binding affinity determined for human Progesterone receptor A isoform	ChEMBL.	8627601
Ki (binding)	= 2698 nM	Binding affinity determined against human Androgen receptor	ChEMBL.	8627601
Ki (binding)	= 2698 nM	Binding affinity determined against human Androgen receptor	ChEMBL.	8627601
Ki (binding)	= 6812 nM	Binding affinity was determined for human glucocorticoid receptor(hGR).	ChEMBL.	8627601
Ki (binding)	= 6812 nM	Binding affinity was determined for human glucocorticoid receptor(hGR).	ChEMBL.	8627601
Max inhibition (functional)	= 81 %	Antagonistic efficacy to the progesterone receptor measured in the T-47D alkaline phospatase assay	ChEMBL.	8627601
Max inhibition (functional)	= 81 %	Antagonistic efficacy to the progesterone receptor measured in the T-47D alkaline phospatase assay	ChEMBL.	8627601
Max inhibition (functional)	= 85 %	Antagonistic efficacy against Human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601
Max inhibition (functional)	= 85 %	Antagonistic efficacy against Human Progesterone receptor B isoform in cotransfected CV-1 cell lines.	ChEMBL.	8627601

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

ChEMBL: CHEMBL299512
PubChem: 10827013

Bibliographic References

1 literature reference was collected for this gene.

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Detailed information for compound 75075