Detailed view for Tb927.10.14990

Basic information

TDR Targets ID: 13041
Trypanosoma brucei, intraflagellar transport protein 80
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.6574 | Length (AA): 782 | MW (Da): 86677 | Paralog Number: 0

Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00400   WD domain, G-beta repeat

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
10 298 3frx (A) 14 304 23.00 0.000061 1 0.539865 0.34
84 138 4yvd (A) 219 273 31.00 0.078 0.99 0.562633 -0.89
195 227 3w15 (A) 338 372 36.00 0 0.17 0.211799 1.24
656 775 4tql (A) 29 150 13.00 0.25 0.07 0.294453 -0.41

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile Bloodstream Form. Siegel TN
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile Procyclic. Siegel TN
Show/Hide expression data references
  • Siegel TN Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Orthologs

Ortholog group members (OG5_129685)

Species Accession Gene Product
Brugia malayi Bm1_33710   RIKEN cDNA 4921524P20
Caenorhabditis elegans CELE_F38G1.1   Protein CHE-2
Drosophila melanogaster Dmel_CG9333   Outer segment 5
Echinococcus granulosus EgrG_000776900   intraflagellar transport protein 80
Echinococcus multilocularis EmuJ_000776900   intraflagellar transport protein 80
Homo sapiens ENSG00000213186   tripartite motif containing 59
Homo sapiens ENSG00000068885   intraflagellar transport 80
Leishmania braziliensis LbrM.19.0650   hypothetical protein, conserved
Leishmania donovani LdBPK_190330.1   intraflagellar transport protein 80, putative
Leishmania infantum LinJ.19.0330   hypothetical protein, conserved
Leishmania major LmjF.19.0330   hypothetical protein, conserved
Leishmania mexicana LmxM.19.0330   hypothetical protein, conserved
Loa Loa (eye worm) LOAG_11044   hypothetical protein
Mus musculus ENSMUSG00000034317   tripartite motif-containing 59
Mus musculus ENSMUSG00000027778   intraflagellar transport 80
Neospora caninum NCLIV_000850   hypothetical protein, conserved
Schistosoma japonicum Sjp_0014060   Intraflagellar transport protein 80 homolog, putative
Schistosoma mansoni Smp_124630   hypothetical protein
Schmidtea mediterranea mk4.000521.13   Intraflagellar transport protein 80 homolog
Trypanosoma brucei gambiense Tbg972.10.18240   hypothetical protein, conserved
Trypanosoma brucei Tb927.10.14990   intraflagellar transport protein 80
Trypanosoma congolense TcIL3000_10_12840   intraflagellar transport protein 80, putative
Trypanosoma cruzi TcCLB.506211.30   intraflagellar transport protein 80, putative
Toxoplasma gondii TGME49_293890   intraflagellar transport 80 family protein
Trichomonas vaginalis TVAG_383970   WD repeat-containing protein, putative

Essentiality

Tb927.10.14990 has direct evidence of essentiality
Gene/Ortholog Organism Phenotype Source Study
Tb927.10.14990 this record Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.10.14990 this record Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.10.14990 this record Trypanosoma brucei no significant loss or gain of fitness in procyclic forms alsford
Tb927.10.14990 this record Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
TGME49_293890 Toxoplasma gondii Probably non-essential sidik
Show/Hide essentiality data references
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

Annotated phenotypes:

Affected Entity Phenotypic quality Occurs in Occurs at Evidence Observed in Drugs/Inhibitors
cell proliferation (GO:0008283) decreased (PATO:0000468) bloodstream stage trypomastigotes (PLO:0027) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: decreased cell proliferation (significant loss of fitness) in bloodstream forms (stage 6 days). References: 21363968
cell proliferation (GO:0008283) normal (PATO:0000461) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: normal cell proliferation (no significant loss or gain of fitness) in procyclic forms . References: 21363968
cell proliferation (GO:0008283) decreased (PATO:0000468) procyclic (PLO:0034) inferred from RNAi experiment (ECO:0000019) No drug identifiers listed for this gene.
Annotator: fernan@iib.unsam.edu.ar. Comment: decreased cell proliferation (significant loss of fitness) in differentiation of procyclic to bloodstream forms . References: 21363968

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

1 literature reference was collected for this gene.

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Gene identifier Tb927.10.14990 (Trypanosoma brucei), intraflagellar transport protein 80
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