pI: 6.6518 |
Length (AA): 373 |
MW (Da): 42586 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 4 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
27 | 101 | 3f9i (A) | 4 | 71 | 16.00 | 0.5 | 0.05 | 0.190172 | 0.4 |
31 | 117 | 3slk (A) | 511 | 598 | 16.00 | 0.38 | 0.08 | 0.405344 | -0.5 |
128 | 266 | 2a35 (A) | 85 | 209 | 32.00 | 0.19 | 0.86 | 0.556354 | 0.56 |
202 | 255 | 3o0p (A) | 98 | 147 | 36.00 | 0.67 | 0.16 | 0.320472 | 1.14 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Lower 20-40% percentile | Procyclic, Bloodstream Form. | Siegel TN |
Siegel TN | Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites. |
Ortholog group members (OG5_128491)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT2G20360 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9 |
Brugia malayi | Bm1_11415 | NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial precursor |
Candida albicans | CaO19.1682 | potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to N. crassa and mammalian 40kd subunits |
Candida albicans | CaO19.9251 | potential mitochondrial NADH-Ubiquinone Oxidoreductase Complex I subunit similar to N. crassa and mammalian 40kd subunits |
Caenorhabditis elegans | CELE_Y53G8AL.2 | Protein Y53G8AL.2 |
Dictyostelium discoideum | DDB_G0272266 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial |
Drosophila melanogaster | Dmel_CG6020 | CG6020 gene product from transcript CG6020-RA |
Echinococcus granulosus | EgrG_000915700 | NADH dehydrogenase ubiquinone 1 alpha |
Echinococcus multilocularis | EmuJ_000915700 | NADH dehydrogenase (ubiquinone) 1 alpha |
Homo sapiens | 4704 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa |
Leishmania braziliensis | LbrM.34.1930 | hypothetical protein, conserved |
Leishmania donovani | LdBPK_352010.1 | hypothetical protein, conserved |
Leishmania infantum | LinJ.35.2010 | hypothetical protein, conserved |
Leishmania major | LmjF.35.2020 | hypothetical protein, conserved |
Leishmania mexicana | LmxM.34.2020 | hypothetical protein, conserved |
Loa Loa (eye worm) | LOAG_08802 | hypothetical protein |
Loa Loa (eye worm) | LOAG_10415 | hypothetical protein |
Mus musculus | ENSMUSG00000000399 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 |
Oryza sativa | 4331143 | Os02g0816800 |
Onchocerca volvulus | OVOC11747 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial homolog |
Schistosoma japonicum | Sjp_0057210 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial precursor, putative |
Schistosoma japonicum | Sjp_0304430 | ko:K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 9, putative |
Schistosoma mansoni | Smp_106080.2 | NADH-ubiquinone oxidoreductase |
Schistosoma mansoni | Smp_106080.1 | NADH-ubiquinone oxidoreductase |
Schmidtea mediterranea | mk4.021587.01 | NADH dehydrogenase |
Schmidtea mediterranea | mk4.008682.00 | |
Schmidtea mediterranea | mk4.001312.02 | NADH dehydrogenase |
Trypanosoma brucei gambiense | Tbg972.9.9530 | hypothetical protein, conserved |
Trypanosoma brucei | Tb927.9.15380 | nadh-ubiquinone oxidoreductase 39 kda subunit |
Trypanosoma congolense | TcIL3000_9_6470 | hypothetical protein, conserved |
Trypanosoma cruzi | TcCLB.506241.160 | hypothetical protein, conserved |
Wolbachia endosymbiont of Brugia malayi | Wbm0237 | nucleoside-diphosphate-sugar epimerase |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb09.244.2620 this record | Trypanosoma brucei | no significant loss or gain of fitness in bloodstream forms (3 days) | alsford |
Tb09.244.2620 this record | Trypanosoma brucei | significant loss of fitness in bloodstream forms (6 days) | alsford |
Tb09.244.2620 this record | Trypanosoma brucei | no significant loss or gain of fitness in procyclic forms | alsford |
Tb09.244.2620 this record | Trypanosoma brucei | no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms | alsford |
CELE_Y53G8AL.2 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_Y53G8AL.2 | Caenorhabditis elegans | larval arrest | wormbase |
CELE_Y53G8AL.2 | Caenorhabditis elegans | slow growth | wormbase |
CELE_Y53G8AL.2 | Caenorhabditis elegans | sterile | wormbase |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
Affected Entity | Phenotypic quality | Occurs in | Occurs at | Evidence | Observed in | Drugs/Inhibitors |
---|---|---|---|---|---|---|
cell proliferation (GO:0008283) | normal (PATO:0000461) | bloodstream stage trypomastigotes (PLO:0027) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | normal cell proliferation (no significant loss or gain of fitness) in bloodstream forms (stage 3 days). | References: | 21363968 | |
cell proliferation (GO:0008283) | decreased (PATO:0000468) | bloodstream stage trypomastigotes (PLO:0027) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | decreased cell proliferation (significant loss of fitness) in bloodstream forms (stage 6 days). | References: | 21363968 | |
cell proliferation (GO:0008283) | normal (PATO:0000461) | procyclic (PLO:0034) | inferred from RNAi experiment (ECO:0000019) | No drug identifiers listed for this gene. | ||
Annotator: | fernan@iib.unsam.edu.ar. | Comment: | normal cell proliferation (no significant loss or gain of fitness) in differentiation of procyclic to bloodstream forms . | References: | 21363968 |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Species | Known druggable target | Linked compounds | Reference |
---|---|---|---|
Homo sapiens | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa | Compounds | References |
Target | Type | Source | Notes |
---|---|---|---|
Tb927.9.15380 | purified protein | BRENDA | A protein with this EC number or name or sequence has been purified from Trypanosoma brucei ( 2 ) |
9 literature references were collected for this gene.