Detailed view for LmjF.26.2510

Basic information

TDR Targets ID: 21735
Leishmania major, protein kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 7.683 | Length (AA): 481 | MW (Da): 54492 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain
PF01363   FYVE zinc finger

Gene Ontology

Mouse over links to read term descriptions.
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0046872   metal ion binding  
GO:0008270   zinc ion binding  
GO:0005524   ATP binding  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 6 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
5 427 2acx (A) 44 470 23.00 0 1 1.06 0.18
130 415 1mq4 (A) 127 388 32.00 0 1 1.01 -1.03
16 70 1dvp (A) 153 213 40.00 0.42 0.37 0.351045 0.83
19 471 3nyn (A) 54 514 23.00 0 1 1.05019 0.84
134 417 3hzt (A) 74 344 29.00 0 1 0.866837 -0.24
206 407 2jii (A) 250 452 18.00 0.000085 0.72 0.556358 0.18

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile metacyclic. Fernandes MC
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile amastigotes. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_146003)

Species Accession Gene Product
Leishmania braziliensis LbrM.26.2450   protein kinase, putative
Leishmania donovani LdBPK_262540.1   protein kinase, putative
Leishmania infantum LinJ.26.2540   protein kinase, putative
Leishmania major LmjF.26.2510   protein kinase, putative
Leishmania mexicana LmxM.26.2510   protein kinase, putative
Trypanosoma brucei gambiense Tbg972.9.290   hypothetical protein, conserved
Trypanosoma brucei Tb927.9.1570   calcium/calmodulin-dependent protein kinase, putative
Trypanosoma congolense TcIL3000_9_190   protein kinase, putative
Trypanosoma congolense TcIL3000_9_160   protein kinase, putative
Trypanosoma cruzi TcCLB.503925.30   calcium/calmodulin-dependent protein kinase, putative
Trypanosoma cruzi TcCLB.510347.60   calcium/calmodulin-dependent protein kinase, putative

Essentiality

LmjF.26.2510 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb09.160.0500 Trypanosoma brucei no significant loss or gain of fitness in bloodstream forms (3 days) alsford
Tb09.160.0500 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb09.160.0500 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb09.160.0500 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.5

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Rattus norvegicus Mitogen-activated protein kinase 1 358 aa 20.8% 313 aa Compounds References
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 25.1% 295 aa Compounds References
Patiria pectinifera Cdc2 300 aa 20.7% 309 aa Compounds References
Rattus norvegicus MAP kinase p38 alpha 360 aa 25.9% 313 aa Compounds References
Xenopus laevis Aurora kinase B-A 361 aa 25.1% 315 aa Compounds References
Rattus norvegicus c-Jun N-terminal kinase 3 464 aa 23.8% 386 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 19.9% 292 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0007 0.5 0.5
0.0081 0.5 0.5
0.0098 0.3242 0.2614
0.0016 0.5 0.5
0.0036 0.5 0.5
0.0012 0.5 0.5
0.0059 1 1
0.0016 0.5 0.5
0.0059 1 1
0.0037 1 0.5
0.0091 1 0.5
0.0011 1 0.5
0.0067 0.5 0.5
0.0012 0.5 0.5
0.0081 1 0.5
0.0066 0.3101 0
0.0069 0.3067 1
0.0018 0.5 0.5
0.0061 0.6883 0.5304
0.0027 1 0.5
0.0022 0.5 0.5
0.0008 0.5 0.5
0.0064 0.3377 0
0.0092 1 0.5
0.0039 0.9485 0.5
0.0012 0.5 0.5
0.0023 0.5 0.5
0.0056 1 0.5
0.0088 0.4477 1
0.0063 1 1
0.0042 0.5 0.5
0.0007 0.5 0.5
0.0007 0.5 0.5
0.0093 0.8828 0
0.0039 0.5 0.5
0.0003 0.5 0.5
0.0063 0.7244 0.2543
0.0059 1 1
0.0032 0.5 0.5
0.0033 0.5 0.5
0.0029 0.5 0.5
0.0039 0.5 0.5
0.0032 0.5 0.5
0.0004 0.5 0.5
0.0062 0.6935 0
0.0026 0.5 0.5
0.0033 1 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

22 literature references were collected for this gene.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

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Gene identifier LmjF.26.2510 (Leishmania major), protein kinase, putative
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