Detailed view for Bm1_42960

Basic information

TDR Targets ID: 234629
Brugia malayi, hypothetical protein
Source Database / ID:  GenBank

pI: 7.8747 | Length (AA): 364 | MW (Da): 41947 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF04502   Family of unknown function (DUF572)

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 2 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
108 292 4uos (A) 1 183 9.00 0.33 0.01 0.701142 -1.29
160 232 2j8k (A) 75 172 37.00 0.21 0.82 0.221249 0.84

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129622)

Species Accession Gene Product
Arabidopsis thaliana AT1G25682   hypothetical protein
Babesia bovis BBOV_IV006990   cell cycle control related protein, putative
Brugia malayi Bm1_42960   hypothetical protein
Caenorhabditis elegans CELE_ZK1307.9   Protein ZK1307.9
Dictyostelium discoideum DDB_G0281599   coiled-coil domain-containing protein 130
Drosophila melanogaster Dmel_CG15084   CG15084 gene product from transcript CG15084-RA
Echinococcus granulosus EgrG_000704800   coiled coil domain containing protein 130
Entamoeba histolytica EHI_192730   hypothetical protein, conserved
Echinococcus multilocularis EmuJ_000704800   coiled coil domain containing protein 130
Homo sapiens ENSG00000104957   coiled-coil domain containing 130
Loa Loa (eye worm) LOAG_03997   hypothetical protein
Mus musculus ENSMUSG00000004994   coiled-coil domain containing 130
Neospora caninum NCLIV_057100   GH23000, related
Oryza sativa 4329178   Os02g0324300
Plasmodium berghei PBANKA_1447100   conserved protein, unknown function
Plasmodium falciparum PF3D7_1232400   conserved protein, unknown function
Plasmodium knowlesi PKNH_1451900   conserved protein, unknown function
Plasmodium vivax PVX_100565   hypothetical protein, conserved
Schistosoma japonicum Sjp_0100880   Coiled-coil domain-containing protein 130, putative
Toxoplasma gondii TGME49_313880   nuclear protein-like family protein
Theileria parva TP03_0208   hypothetical protein, conserved

Essentiality

Bm1_42960 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_ZK1307.9 Caenorhabditis elegans embryonic lethal wormbase
PBANKA_1447100 Plasmodium berghei Slow plasmo
TGME49_313880 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Bm1_42960 (Brugia malayi), hypothetical protein
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