Detailed view for Bm1_16225

Basic information

TDR Targets ID: 237904
Brugia malayi, hypothetical protein
Source Database / ID:  GenBank

pI: 8.5849 | Length (AA): 411 | MW (Da): 46161 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0016491   oxidoreductase activity  
GO:0055114   oxidation reduction  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
36 341 3sx6 (A) 0 357 20.00 0 1 0.859326 -0.18
36 106 1fec (A) 1 67 39.00 0.11 0.21 0.411749 1.14
38 79 3ics (A) 2 43 29.00 0 0.18 0.38399 0.13
39 406 3hyw (A) 3 409 18.00 0.7 1 0.869377 0.53
40 405 3hyw (A) 4 408 22.00 0 1 1.01231 0.05

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_129122)

Species Accession Gene Product
Brugia malayi Bm1_16225   hypothetical protein
Brugia malayi Bm1_16220   hypothetical protein
Caenorhabditis elegans CELE_Y9C9A.16   Protein Y9C9A.16, isoform B
Caenorhabditis elegans CELE_F02H6.5   Protein SQRD-1, isoform A
Dictyostelium discoideum DDB_G0292250   hypothetical protein
Drosophila melanogaster Dmel_CG14997   CG14997 gene product from transcript CG14997-RB
Echinococcus granulosus EgrG_001157900   sulfide:quinone oxidoreductase
Echinococcus multilocularis EmuJ_001157900   sulfide:quinone oxidoreductase
Homo sapiens ENSG00000137767   sulfide quinone reductase-like (yeast)
Mus musculus ENSMUSG00000005803   sulfide quinone reductase-like (yeast)
Mycobacterium tuberculosis Rv0331   Possible dehydrogenase/reductase
Schistosoma japonicum Sjp_0215490   ko:K00540 sulfide dehydrogenase [EC:1.-.-.-], putative
Schistosoma mansoni Smp_062070.2   sulfide quinone reductase
Schistosoma mansoni Smp_062070.1   sulfide quinone reductase
Schmidtea mediterranea mk4.004612.00   Sulfide quinone reductase, putative
Schmidtea mediterranea mk4.002209.08   Sulfide quinone reductase, putative

Essentiality

Bm1_16225 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
mtu334 Mycobacterium tuberculosis non-essential nmpdr
Show/Hide essentiality data references
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Bm1_16225 (Brugia malayi), hypothetical protein
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