Detailed view for Bm1_11580
Basic information
Brugia malayi, oxidoreductase, zinc-binding dehydrogenase family protein
Source Database / ID: GenBank
pI: 9.3736 |
Length (AA): 384 |
MW (Da): 42780 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Network
Gene Ontology
GO:0016491 oxidoreductase activity
GO:0008270 zinc ion binding
GO:0005488 binding
GO:0003824 catalytic activity
GO:0055114 oxidation reduction
GO:0008152 metabolic process
Metabolic Pathways
Structural information
Modbase 3D models:
There are 6 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
| Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
|---|---|---|---|---|---|---|---|---|---|
| 28 | 381 | 2vn8 (A) | 0 | 395 | 38.00 | 0 | 1 | 1.36018 | -0.39 |
| 30 | 384 | 4a27 (A) | 42 | 385 | 28.00 | 0 | 1 | 1.08918 | 0.28 |
| 162 | 265 | 4oki (A) | 671 | 774 | 31.00 | 0.00053 | 1 | 0.654533 | -0.81 |
| 1 | 355 | 4a27 (A) | 42 | 385 | 28.00 | 0 | 1 | 1.166 | 0.28 |
| 1 | 352 | 2vn8 (A) | 0 | 395 | 37.00 | 0 | 1 | 1.45125 | -0.34 |
| 133 | 236 | 4oki (A) | 671 | 774 | 31.00 | 0.0005 | 1 | 0.677958 | -0.81 |
Help me make sense of these data.
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Expression
Orthologs
Ortholog group members (OG5_127317)
| Species | Accession | Gene Product |
|---|---|---|
| Arabidopsis thaliana | AT1G23740 | alkenal/one oxidoreductase |
| Arabidopsis thaliana | AT4G13010 | putative quinone-oxidoreductase-like protein |
| Arabidopsis thaliana | AT3G15090 | GroES-like zinc-binding alcohol dehydrogenase family protein |
| Brugia malayi | Bm1_11580 | oxidoreductase, zinc-binding dehydrogenase family protein |
| Candida albicans | CaO19.14158 | similar to potential zinc-binding oxidoreductase from B.cereus (NP_833231) and to S. cerevisiae AST2 (YER101C) |
| Candida albicans | CaO19.6869 | similar to potential zinc-binding oxidoreductase from B.cereus (NP_833231) and to S. cerevisiae AST2 (YER101C) |
| Candida albicans | CaO19.847 | similar to S. cerevisiae VIM1 (YMR152W) mitochondrial inner membrane protease |
| Candida albicans | CaO19.8467 | similar to S. cerevisiae VIM1 (YMR152W) mitochondrial inner membrane protease |
| Caenorhabditis elegans | CELE_F56H1.6 | Protein RAD-8 |
| Dictyostelium discoideum | DDB_G0288729 | zinc-containing alcohol dehydrogenase |
| Drosophila melanogaster | Dmel_CG17221 | CG17221 gene product from transcript CG17221-RB |
| Echinococcus granulosus | EgrG_000090500 | reticulon 4 interacting protein 1 |
| Echinococcus multilocularis | EmuJ_000090500 | reticulon 4 interacting protein 1 |
| Homo sapiens | 84816 | reticulon 4 interacting protein 1 |
| Loa Loa (eye worm) | LOAG_12185 | oxidoreductase |
| Mus musculus | ENSMUSG00000019864 | reticulon 4 interacting protein 1 |
| Mycobacterium ulcerans | MUL_2209 | oxidoreductase |
| Oryza sativa | 4347491 | Os09g0502500 |
| Oryza sativa | 9266087 | Os04g0358000 |
| Oryza sativa | 4345439 | Os08g0379400 |
| Oryza sativa | 4327011 | Os01g0753100 |
| Oryza sativa | 4335575 | Os04g0359700 |
| Oryza sativa | 4335574 | Os04g0359100 |
| Saccharomyces cerevisiae | YMR152W | Yim1p |
| Schistosoma japonicum | Sjp_0031190 | ko:K03750 molybdopterin biosynthesis protein MoeA, putative |
| Schistosoma mansoni | Smp_067400 | zinc binding dehydrogenase |
| Schmidtea mediterranea | mk4.011034.00 | |
| Schmidtea mediterranea | mk4.011612.00 | |
| Schmidtea mediterranea | mk4.002001.02 | Zinc binding dehydrogenase, putative |
Essentiality
Phenotypes and Validation (curated)
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.
Annotated validation
Associated compounds / Druggability
Known modulators for this target
Predicted associations
By orthology with druggable targets
By sequence similarity to non orthologous druggable targets
Obtained from network model
Assayability
Assay information
Reagent availability
Bibliographic References