pI: 5.0107 |
Length (AA): 818 |
MW (Da): 90143 |
Paralog Number:
0
Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0
Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable
Modbase 3D models:
There are 9 models calculated for this protein. More info on
these models, including the
models themselves is available at:
Modbase
Target Beg | Target End | Template | Template Beg | Template End | Identity | Evalue | Model Score | MPQS | zDope |
---|---|---|---|---|---|---|---|---|---|
2 | 371 | 1s3x (A) | 5 | 366 | 31.00 | 0 | 1 | 0.87 | -0.83 |
2 | 619 | 1yuw (A) | 5 | 554 | 27.00 | 0 | 1 | 0.87 | 0.59 |
435 | 681 | 1dkx (A) | 398 | 605 | 21.00 | 0 | 0.93 | 0.26 | 0.69 |
3 | 691 | 3d2f (A) | 4 | 653 | 31.00 | 0 | 1 | 1.0987 | 0.24 |
3 | 685 | 3c7n (A) | 4 | 649 | 30.00 | 0 | 1 | 1.10736 | 0.31 |
5 | 678 | 3d2f (A) | 6 | 642 | 34.00 | 0 | 1 | 1.10426 | 0.31 |
598 | 683 | 3lof (A) | 533 | 613 | 19.00 | 0 | 0.77 | 0.370534 | -1.16 |
602 | 680 | 2p32 (A) | 538 | 613 | 22.00 | 0 | 1 | 0.415977 | -0.96 |
713 | 806 | 2pms (C) | 174 | 288 | 17.00 | 0.36 | 0.27 | 0.307614 | -0.81 |
Help me make sense of these data.
A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.
PDB Structures:
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Upper 80-100% percentile | VEG Tachyzoite, ME49 Tachyzoite, ME49 merozoite, ME49 Bradyzoite. | Gregory Hehl AB Sibley/Greg |
Upregulation Percent | Ranking | Stage | Dataset |
---|---|---|---|
Mid 40-60% percentile | ME49 Oocyst. | Fritz HM |
Sibley/Greg | ToxoDB |
Fritz HM | Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts. |
Hehl AB | Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes. |
Gregory | ToxoDB |
Ortholog group members (OG5_127167)
Species | Accession | Gene Product |
---|---|---|
Arabidopsis thaliana | AT1G79920 | Heat shock protein 70 |
Arabidopsis thaliana | AT1G79930 | heat shock protein 91 |
Arabidopsis thaliana | AT1G11660 | heat shock protein 70 (Hsp 70) family protein |
Babesia bovis | BBOV_III004240 | dnaK family protein |
Brugia malayi | Bm1_23190 | Hypothetical 86.9 kDa protein C30C11.4 in chromosome III |
Candida albicans | CaO19.2435 | HSP70 family chaperone, HSP90 co-chaperone |
Candida albicans | CaO19.9971 | HSP70 family chaperone, HSP90 co-chaperone |
Caenorhabditis elegans | CELE_C30C11.4 | Protein C30C11.4 |
Cryptosporidium hominis | Chro.40370 | heat shock 105kD; heat shock 105kD alpha; heat shock 105kD beta; heat shock 105kDa protein 1 |
Cryptosporidium parvum | cgd4_3270 | heat shock 105kD; heat shock 105kD alpha; heat shock 105kD beta; heat shock 105kDa protein 1 |
Dictyostelium discoideum | DDB_G0290187 | heat shock protein Hsp70 family protein |
Drosophila melanogaster | Dmel_CG6603 | CG6603 gene product from transcript CG6603-RI |
Echinococcus granulosus | EgrG_000938600 | Heat shock 70 kDa protein 4 |
Echinococcus granulosus | EgrG_000917000 | heat shock protein 105 |
Entamoeba histolytica | EHI_197860 | heat shock protein 70, putative |
Echinococcus multilocularis | EmuJ_000938600 | Heat shock 70 kDa protein 4 |
Echinococcus multilocularis | EmuJ_000917000 | Heat shock 70 kDa protein 4 |
Homo sapiens | ENSG00000120694 | heat shock 105kDa/110kDa protein 1 |
Homo sapiens | 22824 | heat shock 70kDa protein 4-like |
Homo sapiens | 3308 | heat shock 70kDa protein 4 |
Leishmania braziliensis | LbrM.18.1400 | heat shock protein, putative |
Leishmania donovani | LdBPK_181350.1 | heat shock protein, putative |
Leishmania infantum | LinJ.18.1350 | heat shock protein, putative |
Leishmania major | LmjF.18.1370 | heat shock protein, putative |
Leishmania mexicana | LmxM.18.1370 | heat shock protein, putative |
Loa Loa (eye worm) | LOAG_07269 | hypothetical protein |
Mus musculus | 18415 | heat shock protein 4 like |
Mus musculus | ENSMUSG00000020361 | heat shock protein 4 |
Mus musculus | ENSMUSG00000029657 | heat shock 105kDa/110kDa protein 1 |
Neospora caninum | NCLIV_061170 | hypothetical protein |
Oryza sativa | 4341853 | Os06g0679800 |
Oryza sativa | 4337984 | Os05g0181000 |
Oryza sativa | 4325355 | Os01g0180800 |
Plasmodium berghei | PBANKA_1219300 | heat shock protein 110, putative |
Plasmodium falciparum | PF3D7_0708800 | heat shock protein 110 |
Plasmodium knowlesi | PKNH_0107400 | heat shock protein 110, putative |
Plasmodium vivax | PVX_087970 | heat shock protein 110, putative |
Plasmodium yoelii | PY05063 | Plasmodium falciparum CG4 |
Saccharomyces cerevisiae | YPL106C | adenyl-nucleotide exchange factor SSE1 |
Saccharomyces cerevisiae | YBR169C | adenyl-nucleotide exchange factor SSE2 |
Schistosoma japonicum | Sjp_0300270 | ko:K09485 heat shock protein 110kDa, putative |
Schistosoma mansoni | Smp_069130.1 | heat shock protein 70 |
Schistosoma mansoni | Smp_069130.2 | heat shock protein 70 |
Schmidtea mediterranea | mk4.008248.00 | |
Schmidtea mediterranea | mk4.002898.05 | |
Schmidtea mediterranea | mk4.003731.00 | |
Schmidtea mediterranea | mk4.006397.01 | Heat shock 70 kDa protein 4 |
Schmidtea mediterranea | mk4.000732.02 | Heat shock 70 kDa protein 4 |
Schmidtea mediterranea | mk4.022460.00 | Heat shock 70 kDa protein 4 |
Trypanosoma brucei gambiense | Tbg972.10.15330 | heat shock protein, putative |
Trypanosoma brucei | Tb927.10.12710 | heat shock protein 110, putative |
Trypanosoma congolense | TcIL3000_10_10830 | heat shock protein 110, putative |
Trypanosoma cruzi | TcCLB.507831.60 | heat shock protein 110, putative |
Toxoplasma gondii | TGME49_219310 | DnaK family protein |
Theileria parva | TP02_0243 | heat shock protein 110, putative |
Trichomonas vaginalis | TVAG_107710 | heat shock protein 70kD, putative |
Trichomonas vaginalis | TVAG_479220 | heat shock protein, putative |
Trichomonas vaginalis | TVAG_432010 | heat shock protein 70 (HSP70)-4, putative |
Trichomonas vaginalis | TVAG_139320 | heat shock protein, putative |
Trichomonas vaginalis | TVAG_291920 | heat shock protein 70kD, putative |
Trichomonas vaginalis | TVAG_151620 | heat shock protein 70 (HSP70)-4, putative |
Gene/Ortholog | Organism | Phenotype | Source Study |
---|---|---|---|
Tb927.10.12710 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (3 days) | alsford |
Tb927.10.12710 | Trypanosoma brucei | significant loss of fitness in bloodstream forms (6 days) | alsford |
Tb927.10.12710 | Trypanosoma brucei | significant loss of fitness in procyclic forms | alsford |
Tb927.10.12710 | Trypanosoma brucei | significant loss of fitness in differentiation of procyclic to bloodstream forms | alsford |
CELE_C30C11.4 | Caenorhabditis elegans | embryonic lethal | wormbase |
CELE_C30C11.4 | Caenorhabditis elegans | larval arrest | wormbase |
CELE_C30C11.4 | Caenorhabditis elegans | larval lethal | wormbase |
CELE_C30C11.4 | Caenorhabditis elegans | slow growth | wormbase |
TGME49_219310 this record | Toxoplasma gondii | Probably essential | sidik |
wormbase | C. elegans RNAi experiments | WormBase web site, http://www.wormbase.org, release WS170 |
keio | Systematic single-gene knock-out mutants of E. coli K12 | The Keio Collection |
yeastgenome | Systematic deletion of yeast genes | Saccharomyces Genome Database |
nmpdr | Genome-scale essentiality datasets from published studies (M. tuberculosis) | National Microbial Pathogen Data Resource |
blattner | Systematic mutagenesis of the E. coli (MG1655) genome | J Bacteriol 2004, 186:4921-4930 |
alsford | High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome | Genome Res 2011, 21:915-924 |
gerdes | Experimental determination and system-level analysis of essential genes in E. coli MG1655 | Gerdes et al., J Bacteriol. 2003 185:5673-84 |
neb | C. elegans RNAi phenotypes | Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs |
shigen | Profiling of E. coli Chromosome (PEC) | National Institute of Genetics, Japan |
In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.
In any case, if you have information about papers containing relevant validation data for this target, please contact us.