Detailed view for PVX_123615

Basic information

TDR Targets ID: 267130
Plasmodium vivax, formin 2, putative
Source Database / ID:  PlasmoDB 

pI: 9.5836 | Length (AA): 2840 | MW (Da): 321987 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG5

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF02181   Formin Homology 2 Domain
PF10409   C2 domain of PTEN tumour-suppressor protein

Gene Ontology

Mouse over links to read term descriptions.
GO:0003779   actin binding  
GO:0030036   actin cytoskeleton organization and biogenesis  
GO:0016043   cellular component organization and biogenesis  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 8 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
2208 2582 1ux5 (A) 1360 1749 25.00 0.00000046 1 0.32 0.34
2270 2604 1v9d (A) 830 1158 23.00 0 1 0.32 -0.53
2188 2579 3o4x (E) 747 1134 27.00 0 1 0.321528 0.48
2194 2579 4eah (A) 562 927 29.00 0 1 0.351415 0.46
2210 2638 2j1d (G) 614 1017 30.00 0 0.91 0.278556 0.85
2253 2408 4uos (A) 6 161 26.00 0.76 0.9 0.36643 -0.6
2506 2683 4uos (A) 2 183 15.00 0.081 0.02 0.236776 -0.85
2607 2827 5cwm (A) 4 223 10.00 0.011 0.16 0.262217 -1.08

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intraerythrocytic - 30 hs, intraerythrocytic - 36 hs, intraerythrocytic - 40 hs, intraerythrocytic - 48 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intraerythrocytic - 6 hs, intraerythrocytic - 24 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile intraerythrocytic - 12 hs, intraerythrocytic - 18 hs. Zhu L
Show/Hide expression data references
  • Zhu L New insights into the Plasmodium vivax transcriptome using RNA-Seq.

Orthologs

Ortholog group members (OG5_152384)

Species Accession Gene Product
Babesia bovis BBOV_IV007290   formin homology 2 domain containing protein
Plasmodium berghei PBANKA_1434600   formin 2, putative
Plasmodium falciparum PF3D7_1219000   formin 2
Plasmodium knowlesi PKNH_1438600   formin 2, putative
Plasmodium vivax PVX_123615   formin 2, putative
Plasmodium yoelii PY01855   Formin Homology 2 Domain, putative
Theileria parva TP03_0237   hypothetical protein

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.1

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier PVX_123615 (Plasmodium vivax), formin 2, putative
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