Detailed view for PVX_089720

Basic information

TDR Targets ID: 267398
Plasmodium vivax, protein kinase domain containing protein
Source Database / ID:  PlasmoDB 

pI: 10.7724 | Length (AA): 1573 | MW (Da): 180104 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG5

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0005524   ATP binding  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 17 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
499 886 1fmk () 157 461 30.00 0.000000018 1 0.04 0.98
570 992 1om1 (A) 7 331 26.00 0 1 -0.07 0.57
584 1026 1cm8 (A) 8 350 27.00 0 1 0.23 0.36
787 987 1wak (A) 189 655 29.00 0.00000036 1 0.34 -1.13
1303 1544 1c1g (A) 8 253 16.00 0.000034 0 0.3 -0.31
24 171 4uos (A) 31 168 33.00 0.35 0.25 0.212288 -0.31
63 168 4tql (A) 64 170 26.00 0.015 0.08 0.503587 -1.86
602 1062 3my1 (A) 15 321 41.00 0 1 0.0992706 1.16
603 1062 3ddq (C) 1 294 43.00 0 1 -0.172365 1.57
701 1018 4hvs (A) 548 931 16.00 0.0000037 0.19 0.300861 -0.11
803 1225 3hx4 (A) 108 491 25.00 0 1 0.322613 0.45
818 1010 2f2u (A) 149 351 31.00 0.0000000065 1 0.468895 -0.24
861 968 3aln (A) 208 322 44.00 0.0018 0.87 0.0518586 1.16
1223 1457 1dg3 (A) 346 582 12.00 0.015 0.02 0.383096 -2.13
1333 1535 5cwp (A) 3 224 28.00 0.85 0.18 0.672253 -3.73
1342 1418 3s9g (A) 269 350 22.00 0.7 0.01 0.598651 -3.8
1417 1504 4o9b (A) 249 336 24.00 0 0.01 0.696144 -5.95

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intraerythrocytic - 6 hs, intraerythrocytic - 12 hs, intraerythrocytic - 18 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Lower 20-40% percentile intraerythrocytic - 24 hs, intraerythrocytic - 30 hs, intraerythrocytic - 36 hs, intraerythrocytic - 40 hs, intraerythrocytic - 48 hs. Zhu L
Show/Hide expression data references
  • Zhu L New insights into the Plasmodium vivax transcriptome using RNA-Seq.

Orthologs

Ortholog group members (OG5_135486)

Species Accession Gene Product
Babesia bovis BBOV_I001950   protein kinase domain containing protein
Cryptosporidium hominis Chro.60177   cdc2-related protein kinase
Cryptosporidium parvum cgd6_1420   cdc2-related protein kinase, putative
Leishmania braziliensis LbrM.27.2100   protein kinase-like protein
Leishmania donovani LdBPK_271860.1   cdc2-related kinase 9
Leishmania infantum LinJ.27.1860   protein kinase-like protein
Leishmania major LmjF.27.1940   protein kinase-like protein
Leishmania mexicana LmxM.27.1940   protein kinase-like protein
Neospora caninum NCLIV_065460   CMGC kinase, putative
Plasmodium berghei PBANKA_0717300   cdc2-related protein kinase 3
Plasmodium falciparum PF3D7_0415300   cdc2-related protein kinase 3
Plasmodium knowlesi PKNH_0506900   protein kinase, putative
Plasmodium vivax PVX_089720   protein kinase domain containing protein
Plasmodium yoelii PY04026   cdc-2 related kinase 3
Trypanosoma brucei gambiense Tbg.972.2.2560   protein kinase, putative
Trypanosoma brucei Tb927.2.4510   cdc2-related kinase 9
Trypanosoma congolense TcIL3000_2_850   cdc2-related kinase 9
Trypanosoma cruzi TcCLB.507209.40   cdc2-related kinase 9
Trypanosoma cruzi TcCLB.509099.150   cdc2-related kinase 9
Toxoplasma gondii TGME49_249260   cell-cycle-associated protein kinase CDK, putative
Theileria parva TP03_0140   cell division cycle 2 protein kinase, putative

Essentiality

PVX_089720 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb927.2.4510 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb927.2.4510 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb927.2.4510 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb927.2.4510 Trypanosoma brucei no significant loss or gain of fitness in differentiation of procyclic to bloodstream forms alsford
PBANKA_0717300 Plasmodium berghei Essential plasmo
TGME49_249260 Toxoplasma gondii Essentiality uncertain sidik
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Homo sapiens Cyclin-dependent kinase 1/cyclin B1 297 aa 36.2% 260 aa Compounds References
Patiria pectinifera Cdc2 300 aa 35.3% 255 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0022 0.5 0.5
0.0059 1 1
0.0063 0.7244 0.7244
0.0064 0.3377 0.5
0.0056 1 0.5
0.0081 1 0.5
0.0088 0.4477 0.5
0.0093 0.8828 0
0.0032 0.5 0.5
0.0037 1 0.5
0.0039 0.5 0.5
0.0032 0.5 0.5
0.0012 0.5 0.5
0.0003 0.5 0.5
0.0012 0.5 0.5
0.0033 1 1
0.0016 0.5 0.5
0.0012 0.5 0.5
0.0007 0.5 0.5
0.0081 0.5 0.5
0.0091 1 0.5
0.0004 0.5 0.5
0.0063 1 1
0.0033 0.5 0.5
0.0007 0.5 0.5
0.0018 0.5 0.5
0.0042 0.5 0.5
0.0059 1 1
0.0069 0.3067 1
0.0066 0.3101 0.5
0.0067 0.5 0.5
0.0016 0.5 0.5
0.0027 1 0.5
0.0039 0.5 0.5
0.0061 0.6883 1
0.0036 0.5 0.5
0.0026 0.5 0.5
0.0011 1 0.5
0.0092 1 0.5
0.0029 0.5 0.5
0.0008 0.5 0.5
0.0098 0.3242 0.2614
0.0039 0.9485 0.5
0.0023 0.5 0.5
0.0007 0.5 0.5
0.0059 1 1
0.0062 0.6935 0.5

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

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Gene identifier PVX_089720 (Plasmodium vivax), protein kinase domain containing protein
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