Detailed view for LmjF.03.0780

Basic information

TDR Targets ID: 26820
Leishmania major, serine/threonine-protein kinase, putative,protein kinase, putative
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.4918 | Length (AA): 3112 | MW (Da): 322820 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 14 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
248 334 2h6d (A) 16 102 31.00 0.0000052 0.88 0.46 -0.54
248 334 1yrp (A) 13 102 37.00 0.000026 0.97 0.44 -0.01
905 1280 2gph (A) 12 325 19.00 0 0.93 0.11 0.41
920 1225 1fot (A) 90 342 24.00 0 1 0.06 0.34
1017 1218 1yvj (A) 902 1091 20.00 0.00000033 0.54 0.1 -0.51
242 392 3cok (A) 5 160 21.00 0 0.78 0.286522 0.02
245 539 4pds (A) 194 490 20.00 0 0.99 0.0517943 0.74
246 354 3sxs (A) 415 512 37.00 0.35 0.94 0.224826 1.09
586 778 4ke2 (A) 2 195 13.00 0 0.01 0.116218 -0.2
928 1236 5loh (A) 42 849 29.00 0 1 0.0282931 0.83
1033 1163 5eym (A) 158 260 47.00 0.18 1 0.0688951 0.28
1041 1171 4nw6 (A) 170 273 47.00 0 1 0.348895 -0.22
1043 1168 2rku (A) 155 253 36.00 0.00016 0.47 0.130288 0.12
1768 2001 4ke2 (A) 5 195 36.00 0.00019 0.3 0.0519928 1.58

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Lower 0-20% percentile amastigotes, metacyclic. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_173440)

Species Accession Gene Product
Leishmania braziliensis LbrM.03.0680   serine/threonine-protein kinase, putative,protein kinase, putative
Leishmania donovani LdBPK_030760.1   serine/threonine-protein kinase, putative
Leishmania infantum LinJ.03.0760   serine/threonine-protein kinase, putative,protein kinase, putative
Leishmania infantum LinJ.03.0770   serine/threonine-protein kinase, putative,protein kinase, putative
Leishmania major LmjF.03.0780   serine/threonine-protein kinase, putative,protein kinase, putative
Leishmania mexicana LmxM.03.0780   serine/threonine-protein kinase, putative,protein kinase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.4

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0092 1 0.5
0.0036 0.5 0.5
0.0081 1 0.5
0.0012 0.5 0.5
0.0033 0.5 0.5
0.0059 1 1
0.0007 0.5 0.5
0.0059 1 1
0.0039 0.5 0.5
0.0026 0.5 0.5
0.0091 1 0.5
0.0066 0.3101 0
0.0088 0.4477 1
0.0016 0.5 0.5
0.0012 0.5 0.5
0.0069 0.3067 1
0.0032 0.5 0.5
0.0039 0.9485 0.5
0.0067 0.5 0.5
0.0093 0.8828 0
0.0042 0.5 0.5
0.0007 0.5 0.5
0.0033 1 1
0.0061 0.6883 0.5304
0.0016 0.5 0.5
0.0027 1 0.5
0.0003 0.5 0.5
0.0023 0.5 0.5
0.0056 1 0.5
0.0037 1 0.5
0.0029 0.5 0.5
0.0062 0.6935 0
0.0081 0.5 0.5
0.0004 0.5 0.5
0.0008 0.5 0.5
0.0011 1 0.5
0.0012 0.5 0.5
0.0098 0.3242 0.2614
0.0007 0.5 0.5
0.0032 0.5 0.5
0.0039 0.5 0.5
0.0059 1 1
0.0018 0.5 0.5
0.0064 0.3377 0
0.0063 1 1
0.0022 0.5 0.5
0.0063 0.7244 0.2543

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LmjF.03.0780 (Leishmania major), serine/threonine-protein kinase, putative,protein kinase, putative
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