Detailed view for Smp_070860

Basic information

TDR Targets ID: 283834
Schistosoma mansoni, malate dehydrogenase
Source Database / ID:  GeneDB

pI: 5.0742 | Length (AA): 515 | MW (Da): 58931 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

No Pfam domain information for this protein.

Gene Ontology

Mouse over links to read term descriptions.
GO:0016616   oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor  
GO:0016615   malate dehydrogenase activity  
GO:0005488   binding  
GO:0003824   catalytic activity  
GO:0055114   oxidation reduction  
GO:0008152   metabolic process  
GO:0006108   malate metabolic process  
GO:0005975   carbohydrate metabolic process  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 3 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
112 488 1civ (A) 31 365 23.00 0 1 0.973339 -0.76
132 348 1hye (A) 3 191 33.00 0.19 0.89 0.582259 1.02
405 480 3dl2 (A) 389 464 18.00 0 0.71 0.459873 -1.03

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_136609)

Species Accession Gene Product
Echinococcus granulosus EgrG_000893100   malate dehydrogenase 1b
Echinococcus multilocularis EmuJ_000893100   malate dehydrogenase 1b
Homo sapiens ENSG00000138400   malate dehydrogenase 1B, NAD (soluble)
Mus musculus ENSMUSG00000025963   malate dehydrogenase 1B, NAD (soluble)
Schistosoma japonicum Sjp_0110740   expressed protein
Schistosoma mansoni Smp_070860   malate dehydrogenase
Schmidtea mediterranea mk4.005924.00   Putative malate dehydrogenase 1B
Schmidtea mediterranea mk4.009315.00   Putative malate dehydrogenase 1B

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Thermus thermophilus Malate dehydrogenase 327 aa 21.8% 367 aa Compounds References
Sus scrofa Malate dehydrogenase cytoplasmic 334 aa 25.7% 339 aa Compounds References
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_070860 (Schistosoma mansoni), malate dehydrogenase
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