Detailed view for LmjF.30.3050

Basic information

TDR Targets ID: 28940
Leishmania major, protein kinase-like protein
Source Database / ID:  TriTrypDB  GeneDB

pI: 6.9374 | Length (AA): 1899 | MW (Da): 210119 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 8

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00069   Protein kinase domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005524   ATP binding  
GO:0004713   protein tyrosine kinase activity  
GO:0004674   protein serine/threonine kinase activity  
GO:0004672   protein kinase activity  
GO:0006468   protein amino acid phosphorylation  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 11 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1383 1443 1shf (A) 84 140 19.00 0.000000016 0 0.13 -0.7
1386 1813 1qcf (A) 86 512 20.00 0 0.99 0.41 0.06
1425 1899 1omw (A) 55 548 17.00 0 1 0.08 0.23
1566 1820 2clq (A) 686 939 44.00 0 1 0.68 -1.11
1425 1813 4fl2 (A) 168 622 24.00 0 1 0.392645 0.33
1552 1843 3a7i (A) 16 299 34.00 0 1 0.576565 -0.42
1552 1873 4lgd (D) 19 473 32.00 0 1 0.560363 -0.4
1558 1889 4tnd (A) 184 517 21.00 0 1 0.405429 -0.52
1558 1898 3hx4 (A) 49 375 24.00 0 1 0.391368 0.19
1565 1820 4bf2 (A) 685 939 43.00 0 1 0.571608 -0.56
1641 1821 5cem (A) 165 340 29.00 0.000012 0.92 0.419213 -0.65

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile amastigotes, metacyclic. Fernandes MC
Show/Hide expression data references
  • Fernandes MC Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

Orthologs

Ortholog group members (OG5_164248)

Species Accession Gene Product
Leishmania braziliensis LbrM.30.3040   protein kinase-like protein
Leishmania donovani LdBPK_303090.1   protein kinase-like protein
Leishmania infantum LinJ.30.3090   protein kinase-like protein
Leishmania major LmjF.30.3050   protein kinase-like protein
Leishmania mexicana LmxM.29.3050   protein kinase-like protein
Trypanosoma cruzi TcCLB.509065.180   protein kinase-like protein, putative
Trypanosoma cruzi TcCLB.509167.190   STE/STE11 serine/threonine-protein kinase, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Druggability index (range: 0 to 1): 0.7

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
Species Target Length Identity Alignment span Linked Drugs Reference
Sus scrofa Casein kinase I isoform alpha 125 aa 28.6% 133 aa Compounds References
Rattus norvegicus Serine/threonine-protein kinase pim-3 326 aa 28.9% 273 aa Compounds References
Oryctolagus cuniculus Cyclin-dependent kinase 4 189 aa 34.6% 159 aa Compounds References
Rattus norvegicus Cell division protein kinase 5 292 aa 27.8% 291 aa Compounds References
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0037 1 0.5
0.0039 0.5 0.5
0.0032 0.5 0.5
0.0003 0.5 0.5
0.0012 0.5 0.5
0.0012 0.5 0.5
0.0033 1 1
0.0016 0.5 0.5
0.0012 0.5 0.5
0.0007 0.5 0.5
0.0022 0.5 0.5
0.0059 1 1
0.0063 0.7244 0.2543
0.0064 0.3377 0
0.0056 1 0.5
0.0088 0.4477 1
0.0081 1 0.5
0.0032 0.5 0.5
0.0093 0.8828 0
0.0066 0.3101 0
0.0016 0.5 0.5
0.0067 0.5 0.5
0.0027 1 0.5
0.0061 0.6883 0.5304
0.0036 0.5 0.5
0.0039 0.5 0.5
0.0026 0.5 0.5
0.0011 1 0.5
0.0092 1 0.5
0.0029 0.5 0.5
0.0008 0.5 0.5
0.0039 0.9485 0.5
0.0098 0.3242 0.2614
0.0007 0.5 0.5
0.0023 0.5 0.5
0.0059 1 1
0.0062 0.6935 0
0.0081 0.5 0.5
0.0091 1 0.5
0.0004 0.5 0.5
0.0063 1 1
0.0033 0.5 0.5
0.0007 0.5 0.5
0.0018 0.5 0.5
0.0042 0.5 0.5
0.0059 1 1
0.0069 0.3067 1

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier LmjF.30.3050 (Leishmania major), protein kinase-like protein
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