Detailed view for Smp_057140

Basic information

TDR Targets ID: 290299
Schistosoma mansoni, hypothetical protein
Source Database / ID:  GeneDB

pI: 8.3791 | Length (AA): 584 | MW (Da): 65599 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00439   Bromodomain

Gene Ontology

Mouse over links to read term descriptions.
GO:0005515   protein binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1 48 2cu7 (A) 10 57 13.00 0.00073 0.07 0.320992 -1.11
3 73 2ltp (A) 1 71 11.00 0.22 0.01 0.263375 -0.4
333 408 4pkl (A) 6 61 45.00 0.048 0.17 0.189337 0.44
355 478 5mlj (A) 730 831 28.00 0.0088 1 0.406129 -0.33
362 478 3nxb (A) 443 537 25.00 0.0014 0.99 0.349142 -0.39

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_132653)

Species Accession Gene Product
Candida albicans CaO19.6694   similar to human thyroid hormone receptor transcriptional coactivator
Candida albicans CaO19_6694   hypothetical protein
Candida albicans CaO19.13986   similar to human thyroid hormone receptor transcriptional coactivator
Dictyostelium discoideum DDB_G0274581   BRD group protein
Drosophila melanogaster Dmel_CG14514   CG14514 gene product from transcript CG14514-RA
Echinococcus granulosus EgrG_000195550   bromodomain containing protein 8
Echinococcus multilocularis EmuJ_000195550   bromodomain containing protein 8
Homo sapiens ENSG00000112983   bromodomain containing 8
Mus musculus ENSMUSG00000003778   bromodomain containing 8
Schistosoma japonicum Sjp_0053600   ko:K03357 anaphase-promoting complex component APC10, putative
Schistosoma mansoni Smp_057140   hypothetical protein
Trypanosoma brucei Tb927.9.1365   hypothetical protein

Essentiality

Smp_057140 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
Tb09.211.4460 Trypanosoma brucei significant loss of fitness in bloodstream forms (3 days) alsford
Tb09.211.4460 Trypanosoma brucei significant loss of fitness in bloodstream forms (6 days) alsford
Tb09.211.4460 Trypanosoma brucei significant loss of fitness in procyclic forms alsford
Tb09.211.4460 Trypanosoma brucei significant loss of fitness in differentiation of procyclic to bloodstream forms alsford
Show/Hide essentiality data references
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Species Known druggable target Linked compounds Reference
Homo sapiens bromodomain containing 8 Compounds References
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model

Ranking Plot

Putative Drugs List

Compound Raw Global Species
0.0109 0.2534 0.4768
0.0241 0.2534 0.4768
0.0109 0.2534 0.4768
0.0109 0.2534 0.4768

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_057140 (Schistosoma mansoni), hypothetical protein
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