Detailed view for Smp_165960

Basic information

TDR Targets ID: 292383
Schistosoma mansoni, dcp1 related
Source Database / ID:  GeneDB

pI: 7.5537 | Length (AA): 500 | MW (Da): 55879 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF06058   Dcp1-like decapping family
PF16741   mRNA-decapping enzyme C-terminus

Gene Ontology

Mouse over links to read term descriptions.
GO:0008047   enzyme activator activity  
GO:0043085   positive regulation of catalytic activity  
GO:0000290   deadenylation-dependent decapping of nuclear-transcribed mRNA  

Metabolic Pathways

RNA degradation (KEGG)

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
5 125 1q67 (B) 20 224 29.00 0 1 0.3508 -0.61
6 125 4b6h (A) 10 128 39.00 0 1 0.8452 -1.36
453 494 2wx3 (A) 533 574 40.00 0.00021 0.51 0.5367 -0.39
462 491 2wx4 (A) 329 358 30.00 0 0.16 0.3478 0.06

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_130739)

Species Accession Gene Product
Arabidopsis thaliana AT1G08370   mRNA-decapping enzyme 1
Babesia bovis BBOV_III008540   Dcp1-like decapping family protein
Brugia malayi Bm1_31605   Dcp1-like decapping family protein
Caenorhabditis elegans CELE_Y55F3AM.12   Protein DCAP-1
Dictyostelium discoideum DDB_G0287243   hypothetical protein
Drosophila melanogaster Dmel_CG11183   Decapping protein 1
Echinococcus granulosus EgrG_001095300   mRNA decapping enzyme 1A
Echinococcus multilocularis EmuJ_001095300   mRNA decapping enzyme 1A
Homo sapiens ENSG00000272886   decapping mRNA 1A
Loa Loa (eye worm) LOAG_07386   hypothetical protein
Mus musculus ENSMUSG00000021962   DCP1 decapping enzyme homolog A (S. cerevisiae)
Neospora caninum NCLIV_003520   mRNA decapping enzyme, putative
Oryza sativa 4342837   Os07g0249600
Oryza sativa 4351547   Os12g0156400
Schistosoma japonicum Sjp_0209380   ko:K01567 DCP1 decapping enzyme homolog A [EC:3.-.-.-], putative
Schistosoma mansoni Smp_165960   dcp1 related
Toxoplasma gondii TGME49_209108   hypothetical protein

Essentiality

Smp_165960 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_Y55F3AM.12 Caenorhabditis elegans embryonic lethal wormbase
CELE_Y55F3AM.12 Caenorhabditis elegans larval arrest wormbase
CELE_Y55F3AM.12 Caenorhabditis elegans slow growth wormbase
TGME49_209108 Toxoplasma gondii Probably essential sidik
Show/Hide essentiality data references
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_165960 (Schistosoma mansoni), dcp1 related
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