Detailed view for Smp_171790

Basic information

TDR Targets ID: 294058
Schistosoma mansoni, hypothetical protein
Source Database / ID:  GeneDB

pI: 7.4504 | Length (AA): 5761 | MW (Da): 649632 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF10479   Fragile site-associated protein C-terminus

Gene Ontology

Mouse over links to read term descriptions.
No GO information for this protein.

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
1025 1839 1z3h (B) 103 933 12.00 0 0.23 0.0798685 0.48
1037 1375 4gmo (A) 106 535 14.00 0 0.1 0.048244 -0.06
1038 1879 3ibv (A) 74 935 12.00 0 0.78 0.114555 0.57
2184 2334 1bkd (S) 786 929 15.00 0.00000000061 0.18 0.111711 -0.23

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_130436)

Species Accession Gene Product
Brugia malayi Bm1_41765   hypothetical protein
Caenorhabditis elegans CELE_Y47G6A.29   Protein Y47G6A.29
Caenorhabditis elegans CELE_Y47G6A.23   Protein LPD-3
Dictyostelium discoideum DDB_G0289829   hypothetical protein
Drosophila melanogaster Dmel_CG42556   CG42556 gene product from transcript CG42556-RA
Drosophila melanogaster Dmel_CG42555   CG42555 gene product from transcript CG42555-RJ
Echinococcus granulosus EgrG_000257700   Fragile site associated protein C terminal
Echinococcus multilocularis EmuJ_000257700   Fragile site associated protein, C terminal
Homo sapiens ENSG00000138688   KIAA1109
Loa Loa (eye worm) LOAG_00985   hypothetical protein
Loa Loa (eye worm) LOAG_14915   hypothetical protein
Loa Loa (eye worm) LOAG_12636   hypothetical protein
Loa Loa (eye worm) LOAG_02843   hypothetical protein
Loa Loa (eye worm) LOAG_08261   hypothetical protein
Loa Loa (eye worm) LOAG_03557   hypothetical protein
Mus musculus ENSMUSG00000037270   RIKEN cDNA 4932438A13 gene
Onchocerca volvulus OVOC2132  
Onchocerca volvulus OVOC1564  
Schistosoma japonicum Sjp_0010220   similar to Uncharacterized protein KIAA1109, putative
Schistosoma mansoni Smp_171790   hypothetical protein
Schmidtea mediterranea mk4.022072.01  

Essentiality

Smp_171790 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_Y47G6A.23 Caenorhabditis elegans larval arrest wormbase
Show/Hide essentiality data references
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_171790 (Schistosoma mansoni), hypothetical protein
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