Detailed view for Smp_171530

Basic information

TDR Targets ID: 294383
Schistosoma mansoni, beta-parvin-related
Source Database / ID:  GeneDB

pI: 5.612 | Length (AA): 383 | MW (Da): 44084 | Paralog Number: 0

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00307   Calponin homology (CH) domain

Gene Ontology

Mouse over links to read term descriptions.
GO:0031532   actin cytoskeleton reorganization  
GO:0005515   protein binding  
GO:0003779   actin binding  
GO:0007155   cell adhesion  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 5 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
27 167 5h78 (A) 38 184 27.00 0.46 0.94 0.659846 -0.93
84 350 1dxx (A) 21 244 15.00 0 1 0.600228 0.78
224 349 4edm (A) 243 364 39.00 0 1 0.925682 -1.42
233 383 3hop (A) 37 189 17.00 0.0000023 0.76 0.657656 -0.52
243 382 3fer (C) 30 181 19.00 0 1 0.673435 -0.64

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_131380)

Species Accession Gene Product
Brugia malayi Bm1_39740   Beta-parvin.
Caenorhabditis elegans CELE_T21D12.4   Protein PAT-6
Drosophila melanogaster Dmel_CG32528   CG32528 gene product from transcript CG32528-RB
Echinococcus granulosus EgrG_000805600   beta parvin
Echinococcus multilocularis EmuJ_000805600   beta parvin
Homo sapiens 55742   parvin, alpha
Homo sapiens ENSG00000188677   parvin, beta
Loa Loa (eye worm) LOAG_00737   beta-parvin
Mus musculus ENSMUSG00000022438   parvin, beta
Mus musculus ENSMUSG00000030770   parvin, alpha
Schistosoma japonicum Sjp_0130150   expressed protein
Schistosoma japonicum Sjp_0066160   Beta-parvin, putative
Schistosoma mansoni Smp_171530   beta-parvin-related
Schmidtea mediterranea mk4.003776.00   Paralyzed arrest at two-fold protein 6
Schmidtea mediterranea mk4.003776.01  

Essentiality

Smp_171530 has one or more orthologs with essentiality data
Gene/Ortholog Organism Phenotype Source Study
CELE_T21D12.4 Caenorhabditis elegans adult lethal wormbase
CELE_T21D12.4 Caenorhabditis elegans embryonic lethal wormbase
CELE_T21D12.4 Caenorhabditis elegans larval lethal wormbase
Show/Hide essentiality data references
  • wormbase C. elegans RNAi experiments WormBase web site, http://www.wormbase.org, release WS170
  • plasmo Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes. Bushell, Ellen, et al. "Functional profiling of a Plasmodium genome reveals an abundance of essential genes." Cell 170.2 (2017): 260-272.
  • yeastgenome Systematic deletion of yeast genes Saccharomyces Genome Database
  • gerdes Experimental determination and system-level analysis of essential genes in E. coli MG1655 Gerdes et al., J Bacteriol. 2003 185:5673-84
  • shigen Profiling of E. coli Chromosome (PEC) National Institute of Genetics, Japan
  • blattner Systematic mutagenesis of the E. coli (MG1655) genome J Bacteriol 2004, 186:4921-4930
  • sidik A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes. Sidik, Saima M., et al. "A genome-wide CRISPR screen in toxoplasma identifies essential apicomplexan genes." Cell 166.6 (2016): 1423-1435.
  • nmpdr Genome-scale essentiality datasets from published studies (M. tuberculosis) National Microbial Pathogen Data Resource
  • keio Systematic single-gene knock-out mutants of E. coli K12 The Keio Collection
  • neb C. elegans RNAi phenotypes Data obtained from Wormbase WS150, curated by K. Chaudary and T. Carlow, New England Biolabs
  • goodall The Essential Genome of Escherichia coli K-12 (Transposon directed high-throughput mutagenesis) Goodall, Emily CA, et al. "The essential genome of Escherichia coli K-12." mBio 9.1 (2018): e02096-17.
  • alsford High-throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome Genome Res 2011, 21:915-924

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_171530 (Schistosoma mansoni), beta-parvin-related
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