Detailed view for Smp_055130.2

Basic information

TDR Targets ID: 295759
Schistosoma mansoni, zinc finger protein
Source Database / ID:  GeneDB

pI: 9.1961 | Length (AA): 267 | MW (Da): 30403 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 0

Druggability Group : DG2

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF00169   PH domain
PF01363   FYVE zinc finger

Gene Ontology

Mouse over links to read term descriptions.
GO:0046872   metal ion binding  
GO:0008270   zinc ion binding  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There are 4 models calculated for this protein. More info on these models, including the models themselves is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
11 136 5d3x (B) 245 396 23.00 0 0.99 0.77421 -0.6
11 88 3mpx (A) 1089 1185 28.00 0.38 1 0.443635 0.21
145 216 3t7l (A) 739 808 46.00 0 1 0.808963 -0.39
150 213 1vfy (A) 170 230 43.00 0 1 0.581 0.75

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

No expression data available for this gene

Orthologs

Ortholog group members (OG5_132287)

Species Accession Gene Product
Brugia malayi Bm1_39465   Plekhf2 protein
Caenorhabditis elegans CELE_ZK632.12   Protein ZK632.12
Drosophila melanogaster Dmel_CG14782   rush hour
Echinococcus granulosus EgrG_000896300   zinc finger protein
Entamoeba histolytica EHI_021230   Rho guanine nucleotide exchange factor, putative
Echinococcus multilocularis EmuJ_000896300   zinc finger protein
Homo sapiens ENSG00000175895   pleckstrin homology domain containing, family F (with FYVE domain) member 2
Loa Loa (eye worm) LOAG_04589   Plekhf2 protein
Mus musculus ENSMUSG00000049969   pleckstrin homology domain containing, family F (with FYVE domain) member 2
Onchocerca volvulus OVOC5001   Putative zinc finger protein
Schistosoma japonicum Sjp_0089630   Pleckstrin homology domain-containing family F member 2, putative
Schistosoma mansoni Smp_055130.2   zinc finger protein
Schistosoma mansoni Smp_055130.1   zinc finger protein
Schmidtea mediterranea mk4.000137.00   Putative zinc finger protein
Schmidtea mediterranea mk4.000638.01   Putative zinc finger protein
Schmidtea mediterranea mk4.001687.06   Putative zinc finger protein
Trichomonas vaginalis TVAG_278310   Rho/RAC guanine nucleotide exchange factor 1, putative
Trichomonas vaginalis TVAG_088010   lateral signaling target protein, putative
Trichomonas vaginalis TVAG_385380   zinc finger protein FYVE domain containing protein, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier Smp_055130.2 (Schistosoma mansoni), zinc finger protein
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